BAC Information

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BAC

Clone NameMSMg01-154L21
Chromosome7 (Build37)
Map Location 137,947,941 - 137,948,390
singlet/doubletsinglet
Overlap geneBtbd16
Upstream geneLOC100043150, Fgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2, LOC619876
Downstream geneEG434249, Plekha1, Htra1, Dmbt1, 4933402N03Rik, 5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154L21.T7 (MSMg01no154_l21.b1)MSMg01-154L21.TJ (MSMg01no154_l21.g1)
ACCAG355952AG355953
length729723
length of high quality
(start - end)
254 (66 - 319)441 (66 - 506)
definitionCHROMAT_FILE: MSMg01no154_l21.b1 PHD_FILE: MSMg01no154_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:27 2005CHROMAT_FILE: MSMg01no154_l21.g1 PHD_FILE: MSMg01no154_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTGACAAAGATGCGCGGAATTCTCC
CCACATACCCACTACTATGGCAAGTGGCTTGAAATGAGATAGTGCATGTT
ACAATGTTAAAGGTCTACACAGCATCAGAATCTGTTAAGATCAGAAGTCA
CAGCCCCGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCA
GAAGCAGGCGGATTTCTGAGTTTGAGGCCAGCGGGCGATACAGAGAAACC
CTGTCTCGGGAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAACC
CAAAACAAAACAAAACAAATTTTCTTAAGTCACAGAAGCACTGAGCAAGC
ATAACCAACACTGGCAACAGCCATAACGTCAAATTCTTGATTTCACAACT
AATAATACTTGGATTTGTATTAAAAGTGCATTTTCTTGGGCTGGAGAGAT
GGTTCATCGGTTAAGCACTGACTGCTCTTCCAGAGGTCCGGAGTTAATTC
CCAGAAACCACATGGGGGTTCACAACCATCTGTAAGGGGATCTGATGCCC
TCTCCTGGGGCATCTGAAAACAGCGACCGTGTACTCAATATAATTAAATA
AATCTTGGCCTGGAGAGATGCCTCACAGGCTAAGAGCACTGCTCTTTAAG
AGGCCTTGAGTTCAATTCTCTGTAACCACATAGTAGCTCACAACCTTCTT
TTATGAGATTTGTCCGGCGACCTCTTCTG
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACTATGTAGAGCACACTGGCCTCAAAGTCACAGAG
ATCTGTCTCCCCAGTGCTGGCATTAAAGGCATGTGTTACCATATCAGGTG
ACATAGTGGCCACAGCTTGGGCTCTGGAGCCAGGAGCCGTCCCTGACACT
TTGAGTAAGACCTGCCATTGATGAGCATATTGTCATGAGCCGAGCACTCT
CCTAAGCACTTCATCTGTGTGTGGTCAACACAGTGGTGGTTCCAAAGATG
CCCACGTAATCTCTAGAACCCGTGACTATGTCAGAGTACATGACAAAGGG
GAGTTGGGGTTGTAAGTGGAATGAAGGCTACTAACTAGCCGACTTCAACA
TGTGAGGTTCCCTGGGGTATATCCAGTACCTCTGGAAAGGGCTTTGCCAT
ATGCAGGAGAAGAATCAGAGACAGAAGGGATCAGTAGATGCTGCATCGCT
GGCTCAGCCAAAGACAGGGCCAAAAGCCAAGGAATAACAGCGCTTTCTGG
TTGCCTTGAAAGGCAGGGGAAACATTCTCCCTATAGCCCCGGGAGAGAGA
GTATTTGATCCTGTTCACGCCATGATCACAGCCTATTGAACTCCATCTTG
TACTTCTGATCCCTTTATTCCTGACGAACTTGTTGTGACCTTATCGCGTT
TTGTACCAGTCCCCTTTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_l21.g1 MSMg01no154_l21.g1 CHROMAT_FILE:
MSMg01no154_l21.g1 PHD_FILE: MSMg01no154_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:27 2005
         (441 letters)



>mm_chr7_137947751_137948591
          Length = 841

 Score =  797 bits (412), Expect = 0.0
 Identities = 436/450 (96%), Gaps = 10/450 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgtagagcacactggcctcaaagtcacagagatctgtct----------ccccagt 50
           |||||||||||||| ||||||||||||||||||||||||||||          |||||||
Sbjct: 191 actatgtagagcacgctggcctcaaagtcacagagatctgtctgcctctgtctccccagt 250

                                                                       
Query: 51  gctggcattaaaggcatgtgttaccatatcaggtgacatagtggccacagcttgggctct 110
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gctggcattaaaggcatgtgtcaccatatcaggtgacatagtggccacagcttgggctct 310

                                                                       
Query: 111 ggagccaggagccgtccctgacactttgagtaagacctgccattgatgagcatattgtca 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ggagccaggagccgtccctgacactttgagtaagacctgccattgatgagcatattgtca 370

                                                                       
Query: 171 tgagccgagcactctcctaagcacttcatctgtgtgtggtcaacacagtggtggttccaa 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgagccgagcactctcctaagcacttcatctgtgtgtggtcaacacagtggtggttccaa 430

                                                                       
Query: 231 agatgcccacgtaatctctagaacccgtgactatgtcagagtacatgacaaaggggagtt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agatgcccacgtaatctctagaacccgtgactatgtcagagtacatgacaaaggggagtt 490

                                                                       
Query: 291 ggggttgtaagtggaatgaaggctactaactagccgacttcaacatgtgaggttccctgg 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ggggttgtaagtggaatgaaggctactaactagccgacttcaacatgtgaggttccctgg 550

                                                                       
Query: 351 ggtatatccagtacctctggaaagggctttgccatatgcaggagaagaatcagagacaga 410
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ggtatatccagtaccactggaaagggctttgccatatgcaggagaagaatcagagacaga 610

                                         
Query: 411 agggatcagtagatgctgcatcgctggctc 440
           ||||||||| ||||||||||||||||||||
Sbjct: 611 agggatcagaagatgctgcatcgctggctc 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)