BAC Information

Click to search

BAC

Clone NameMSMg01-155D11
Chromosome7 (Build37)
Map Location 96,931,306 - 96,931,673
singlet/doubletsinglet
Overlap geneMe3
Upstream geneTmem135, LOC100039969, Fzd4, Prss23, LOC100040001
Downstream geneCcdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155D11.T7 (MSMg01no155_d11.b1)MSMg01-155D11.TJ (MSMg01no155_d11.g1)
ACCAG356293AG356294
length722716
length of high quality
(start - end)
367 (73 - 439)551 (78 - 628)
definitionCHROMAT_FILE: MSMg01no155_d11.b1 PHD_FILE: MSMg01no155_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:05 2005CHROMAT_FILE: MSMg01no155_d11.g1 PHD_FILE: MSMg01no155_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTATCTGTAACGTGTCAATAGCACTCAAAATGAGAAATTCTTGTC
TTCAGATATTTGAAATTCATAGTCCAAATGCCTTTGGCATTGATAAGGCT
GCATAGCGGAAGACTGAATGTAAGATACAGGAAGTATTTGAGGAATGTTA
TCACAAACACGACTGGGTGACCAGCATAAACGCATAAATAAGAGCAGTCA
GAGAAGGGGGGAAAAAAGAAAGGAGACTCACTCACAAAGACCAACATTTG
CTGGTTGGGGGTTAGTATCATTCTGTCAAAATTCTGTCCAAGAAGTCAGA
GGACCGACAGACAAACAGCTCTTAAGAGCACTTGCTGCTTGTGCAGAAGG
CTAGGGTTCGGCTCTCAGCATCTTCATCAGAAAGCTCTCAACTGGCTGTA
ACTCTGGCTCAAGAGAATCCAACAGTCTCTTCTGGCCTCTGGGAGCACTA
CACCCAAATAGAACCCTACTCTCCTGTACATCACATAAAACCAAATGACC
CCCCCTCTCCAACCCCACATCCTAGATGATGCGCTGAAAAGCGCCCACTT
GCCTTCCAAGAGCCGAATGCCACCCCAGGTCTGGTCATCGGGCGCCCCTA
TGTCTGTCTGGAGACCCTTTGCCCCCTATCCCACTCAGTCCCTCCCCGCA
CCCCAGCCCCCCCCTCCCTTTT
TGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAACATTATGAGTCCATTGACATGTC
TGTGTTCATGAGGATCTGGGAGTGTCGTATACCAATGGAGTGGCAAGAAA
CAGCTGAGGTGTTCGCTCCTGTCTGAACACCCATGTCCCTTGAACTTCAG
AAATGCAAGTCCAAAGATAAAATTAATAAGAATTTTAAAGATAAGAATTT
CTAGATGCGGACAGCAGCATTAAACAAAACACAGGTCTTTTCTGAGGAAC
AGAGAGGTGCAGGGCTTCAAGACAGCACTAGACTTTACAGGTGAGTCCAA
GACAGTTAAGTTGCAGAGTTCAAAAGCCAGCTCAGTCAGTCAACGGGTTC
TCCAGGGAGGGAGTAAGGATTAAAAAGAAAAATTAGACAACACTGTAGCA
TGACCCCAGCCAGTTCTGAGGCTGGAGTGGGTTTATTTTTTCCAGTCTGC
CTTTATACCATTTTAAGTACATGCAAATAATAAGGTCAGTTCTAGGTTAA
GGAACAAACAAGGCAATAAAGTCCAGAGATCCCTGTTTCTCAAGGCTCAC
TGTGATGACGGAGATAAAAGGAATGCCACATCCCTCACCTGAATTTACCT
TGAGCTTTGTATTACCCCAAATGTAAACATTCTTTTTTGTTTAGTTGTTT
GTTTTTTTGAAACAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_d11.b1 MSMg01no155_d11.b1 CHROMAT_FILE:
MSMg01no155_d11.b1 PHD_FILE: MSMg01no155_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:05 2005
         (367 letters)



>mm_chr7_96931106_96931873
          Length = 768

 Score =  681 bits (352), Expect = 0.0
 Identities = 364/368 (98%), Gaps = 1/368 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagcactcaaaatgagaaattcttgtcttcagatatttgaaattcatagtccaaatgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagcactcaaaatgagaaattcttgtcttcagatatttgaaattcatagtccaaatgcc 260

                                                                       
Query: 61  tttggcattgataaggctgcatagcggaagactgaatgtaagatacaggaagtatttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttggcattgataaggctgcatagcggaagactgaatgtaagatacaggaagtatttgag 320

                                                                       
Query: 121 gaatgttatcacaaacacgactgggtgaccagcataaacgcataaataagagcagtcaga 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatgttatcacaaacacggctgggtgaccagcataaacgcataaataagagcagtcaga 380

                                                                       
Query: 181 gaaggggggaaaaaa-gaaaggagactcactcacaaagaccaacatttgctggttggggg 239
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaggggggaaaaaaagaaaggagactcactcacaaagaccaacatttgctggttggggg 440

                                                                       
Query: 240 ttagtatcattctgtcaaaattctgtccaagaagtcagaggaccgacagacaaacagctc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttagtatcattctgtcaaaattctgtccaagaagtcagaggaccgacagacaaacagctc 500

                                                                       
Query: 300 ttaagagcacttgctgcttgtgcagaaggctagggttcggctctcagcatcttcatcaga 359
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 ttaagagcacttgctgcttgtgcagaaggctagggttcggttctcagcatcttcatcaga 560

                   
Query: 360 aagctctc 367
            |||||||
Sbjct: 561 cagctctc 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 768
Length adjustment: 9
Effective length of query: 358
Effective length of database: 759
Effective search space:   271722
Effective search space used:   271722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)