BAC Information

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BAC

Clone NameMSMg01-155E08
Chromosome7 (Build37)
Map Location 140,000,111 - 140,000,316
singlet/doubletsinglet
Overlap geneA930008G19Rik
Upstream geneGpr26, Cpxm2, 4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik
Downstream gene2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2, LOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155E08.T7 (MSMg01no155_e08.b1)MSMg01-155E08.TJ (MSMg01no155_e08.g1)
ACCAG356328AG356329
length771757
length of high quality
(start - end)
217 (112 - 328)---
definitionCHROMAT_FILE: MSMg01no155_e08.b1 PHD_FILE: MSMg01no155_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:08 2005CHROMAT_FILE: MSMg01no155_e08.g1 PHD_FILE: MSMg01no155_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAACTTACTTCCCACAAAAAGGCGCGAACCTATAGCTGGGGAAACT
GAGATGTATTGATTGAACTTTCAAAAGACAGATTCACAAGAAAATGTAAT
TATTCCCAGTGACCTTCTGGGGGAAACAGGAAGTAAATTTGGCAGCTCCA
GCCTCCCCATTTATTCAGATTCCATTTTTTCCACTCAAGAGATTGTTAAA
AGGGTTTTCAAAAGGCCTGTGGGCCTTTTTTTTTTTTAAGTCTAGCTTTT
TATTCTTATTTTTATTTTTTATTTTTGCATTTGCGATCCAGATGCCTGAA
AGTAAATCATGTTGCGGTGTTTGCCATCCCAGGCCCGTACAAGTATCATA
TTTTGTTCACATGTCTGACCCCACCCCACAACATTGCTGCTACACCTTCC
TGCACACGCCAACTGTGTTTTGCCCCTGCCAGTGCTTGCCCTTACACCTT
TTCCCTTTCACATACGCCCGTTCCATTGCATTACCCCATACCGTGTCCCA
TTCGCCTTGTCTTTTGGTCCCTCCGCCTCTCCTTCTTATTTTCCCCGCTT
TCATTCCCCCACCTTCCCTTTCCCTCTTTTCCCTTTCCCCCTTTTTTCCC
CTTTTATCTCCTTCCATTCCCCTCCCCCCCTCCTTTATTTCCTTTTACCC
CCGTTCCTTTTCTCCCCCTTTTTTTTTTCCCTTTTCACTTCACCCCCTAT
CCCACTTTTTTCCCCCCCCCT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTATGGAGAAGAACATGACGTTGAA
CTTCTGGCTCGACCTGTGTCTATCACCTCATAACTGCGGGTACAGGCACA
CCCCATCCTTCTTAAGATACGAACTGATGGCACTCGAAACGTCTAACATG
TGTATATCAGGCGACATCTCAAGTGACTGAGCAAGTGAATCAAGCCAAAT
GCACATCCATTGACTGTTCCCCGACCCATGTGAACTGCCACTCTGGACAT
ACGACTGGGGATTCCACTTATAGTTGGCCATAGTCACAAAAGGAGCCCAC
AACCTGACCGATCATGTATGTTTGACCACGAAATCCCCGAACATTTAAGG
AATGAATCTAGATTTCTATCACCCTTCGCCTGAAATATTTATAATACCCT
CTAACCTGCATATGTCCGGCCACGCTGTTCCTGAGACCACTGTGTACAAC
ACCGTGTGCAAATTCTATTCATCTGCTTTTCCCTCGTTTTGTGACCATGG
CTCCCGATTATTCCACCACTGTTACTATCCACCATCGTCTGTTTTTTCCA
TCCATTTTGCTTGTTTCTTTATACCCCTTTACCCTTTTGTTCCCCTACCG
ATTTACCCTTGTTTTCCCGCTTTCTTTTATCCCGCCCCCCCTTTTTATCC
AAACCCGTTGCCCCAACTCCTGTTTATCCCTATTCTTTTTCCCCGTTGTT
CCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_e08.b1 MSMg01no155_e08.b1 CHROMAT_FILE:
MSMg01no155_e08.b1 PHD_FILE: MSMg01no155_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:08 2005
         (217 letters)



>mm_chr7_139999932_140000548
          Length = 617

 Score =  391 bits (202), Expect = e-113
 Identities = 205/206 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   ttgaactttcaaaagacagattcacaagaaaatgtaattattcccagtgaccttctgggg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgaactttcaaaagacagattcacaagaaaatgtaattattcccagtgaccttctgggg 326

                                                                       
Query: 62  gaaacaggaagtaaatttggcagctccagcctccccatttattcagattccattttttcc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaacaggaagtaaatttggcagctccagcctccccatttattcagattccattttttcc 266

                                                                       
Query: 122 actcaagagattgttaaaagggttttcaaaaggcctgtgggccttttttttttttaagtc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actcaagagattgttaaaagggttttcaaaaggcctgtgggccttttttttttttaagtc 206

                                     
Query: 182 tagctttttattcttatttttatttt 207
           |||||||||||| |||||||||||||
Sbjct: 205 tagctttttatttttatttttatttt 180


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space:   126464
Effective search space used:   126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)