BAC Information

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BAC

Clone NameMSMg01-155E09
Chromosome7 (Build37)
Map Location 140,000,013 - 140,000,353
singlet/doubletsinglet
Overlap geneA930008G19Rik
Upstream geneGpr26, Cpxm2, 4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik
Downstream gene2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2, LOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155E09.T7 (MSMg01no155_e09.b1)MSMg01-155E09.TJ (MSMg01no155_e09.g1)
ACCAG356330AG356331
length765766
length of high quality
(start - end)
350 (70 - 419)200 (71 - 270)
definitionCHROMAT_FILE: MSMg01no155_e09.b1 PHD_FILE: MSMg01no155_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:09 2005CHROMAT_FILE: MSMg01no155_e09.g1 PHD_FILE: MSMg01no155_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAGAGAACCGCGGAA
TTCTATCTTCTGCCCGACAAAGGCGGGGCCTTAGCTGGGGGGACTGAGAT
GTTTTGCTTGAACTTTCAAAAGACAGATTCACAAGAAAATGTAATTATTC
CCAGTGACCTTCTGGGGGAAACAGGAAGTAAATTTGGCAGCTCCAGCCTC
CCCATTTATTCAGATTCCATTTTTTCCACTCAAGAGATTGTTAAAAGGGT
TTTCAAAAGGCCTGTGGGCCTTTTTTTTTTTTAAGTCTAGCTTTTTATTT
TTATTTTTATTTTTTATTTTTGCATTTGTGATCCAGATGTCTGAAAGTAA
ATTATGTTGCGGTGCTTGCCATCCCAGGTTCGTACAAGTATCATATTTTG
TTTACATGTCTGAAGTAATCAGAGAATACTGTTGCACATCTTCCAGCACA
GGGGAACTGGGCCTGCCCCTGCTAGTGCTGGGCCGACTTTTCATCCCCAG
ACCGATGGATGGTTCCCTGTATGAAGCCCAGTGCTTGCAACGCTCCGTGC
CCTGTTACCCGTCCCCCTTTTTTCGCCCTCCTTTTATATTACTTTTGACC
TCCTCATTTTTCAACACCGTTTTCATTCTCACCCACTTTTTTTTATCCCC
CCTCTTTTCTCCCCTCCCATTTTTTATCTCTCCCTTCTCCCCTTTTTTTT
CGTGTTCCCCCCTTTTTTTACCTTCCCCTTATTTCTCATTATTTACACTT
ATCGCGTCTTTATTC
ATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTATGTAGATGAAGATGACCTTGAACTTC
TGGTCTTCCTGCCTCTATCTCCTAAGTACTGGGGTTACAGGCACACACCA
TCCTTCTTAATGTATGCAGTGCTGGGGCTCGAACCCACAGCCTTGTGTAT
ACCAGTCAGGAACTCTACTGACTGAGCTACAGACTCAGCCCACATGGACA
CAGTTTTACTGTTCCCCGAGCCATGGCAGGTGTCAGGCAGGACATATCAC
CTGGGATTCCATCTGTAGGGAGCCTAGCCATACTAAGGCCTCAGCACCTG
CCCGACGATGGATGCTTGAGTTGGAACCCTTGAATATTTCAGGTCTGAAT
CAACAGTTTTAGCACAGCTGCCTGATAGTCCGCACGTTAGTCCATCTTTA
CTCGCTTCCTCCTCTGCACCTGCTGCTACTCCGCTCATCTTTTGCCCACC
CCTTTTTTACCCCTAGTTACCTGTTATTGAGCGTTATTCCCCCCCTTTTC
CATTTCGCATTGTCTCCATTTTCCCCCTTTGTTCTCCTTCCCCATTTTCC
CTTTTTTTTACCCTTTTTTCCGTTTTATCCCCTCTTCCCCTTTCCCTTTC
CCCCCTTTTTTCCTTTTTTCCCCTTTTCCCCATTTTTTTCCCTTTTCCCT
TTTTTTCCCTTTTTTCCCCCCCCTTTTTCCTTTATCCTTCCCCCTCTTTT
CCCTCCCTTTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_e09.b1 MSMg01no155_e09.b1 CHROMAT_FILE:
MSMg01no155_e09.b1 PHD_FILE: MSMg01no155_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:09 2005
         (350 letters)



>mm_chr7_139999933_140000681
          Length = 749

 Score =  627 bits (324), Expect = 0.0
 Identities = 340/350 (97%), Gaps = 9/350 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggcggggccttagctggggggactgagatgttttgcttgaactttcaaaagacagatt 60
           ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaggcggggccctagct-gggggactgagatgttttgcttgaactttcaaaagacagatt 363

                                                                       
Query: 61  cacaagaaaatgtaattattcccagtgaccttctgggggaaacaggaagtaaatttggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cacaagaaaatgtaattattcccagtgaccttctgggggaaacaggaagtaaatttggca 303

                                                                       
Query: 121 gctccagcctccccatttattcagattccattttttccactcaagagattgttaaaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gctccagcctccccatttattcagattccattttttccactcaagagattgttaaaaggg 243

                                                                       
Query: 181 ttttcaaaaggcctgtgggccttttttttttttaagtctagctttttatttttattttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttttcaaaaggcctgtgggccttttttttttttaagtctagctttttatttttattttta 183

                                                                       
Query: 241 ttttttatttttgcatttgtgatccagatgtctgaaagtaaattatgttgcggtgcttgc 300
           ||||        ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tttt--------gcatttgtgatccagatgtctgaaagtaaattatgttgcggtgcttgc 131

                                                             
Query: 301 catcccaggttcgtacaagtatcatattttgtttacatgtctgaagtaat 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 catcccaggttcgtacaagtatcatattttgtttacatgtctgaagtaat 81


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 749
Length adjustment: 9
Effective length of query: 341
Effective length of database: 740
Effective search space:   252340
Effective search space used:   252340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)