BAC Information

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BAC

Clone NameMSMg01-155M04
Chromosome7 (Build37)
Map Location 91,813,323 - 91,813,893
singlet/doubletsinglet
Overlap geneZfand6
Upstream geneIl16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2, 9930013L23Rik, 2210412D01Rik, Arnt2, LOC100039239, Fah
Downstream gene2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155M04.T7 (MSMg01no155_m04.b1)MSMg01-155M04.TJ (MSMg01no155_m04.g1)
ACCAG356684AG356685
length739739
length of high quality
(start - end)
463 (42 - 504)571 (71 - 641)
definitionCHROMAT_FILE: MSMg01no155_m04.b1 PHD_FILE: MSMg01no155_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:44 2005CHROMAT_FILE: MSMg01no155_m04.g1 PHD_FILE: MSMg01no155_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTGTTTACTCCCGTACCACATTTTTTAATAGGGTTGTTTGTTTCTCTA
GAGTCTAACCACTTGAGTTCTTAATAAATTTTGGATATTAACCCTCTATC
AGATGTGGGGTGAGTGAAGAGTTTTTCCTAATGTGTAGATTGCTGATTTG
TCTTATTGACTATGTCCTTTGCCCTACAGAAGCTTTCCAGTGTCATGATG
TCCTGTTTATCAATTCTTAATCTTAGACCCTGAGCCATTGGAGTTCTGTT
TAAGAAATTTCCCCCTGTGCCAGTGAGTTCAAGTCTCTTTCCCATTTTCT
CTTCTATTAGATTCAATGATTCTGGTTTTATGTTGAGGTCCTTGATTCAC
TTGGACTTGAGCTTTGTATAAGGTGACAAATATCTATTTTAATTTTTCTA
CATACCAACCACTATGATTGCATAGCAGGCATGACCCTCAGTGGTAGCAG
GGGTTGGTACTTCACCATGTCTTCAGGTGGTAGGGTTGGCTACTCGTAAC
AGGTTATTCCTCTACACCCTTGGTCTCCAGTTCCATCTCTCTGTTTTATG
CTCAAATTGTTCCACTTTTCTTTCCACCCTATATGGCCTCTATAAACTTG
TACGTTGCACTGGACCCCTACTGTTGCTCAGTCACTCAGCTGCCTTGTGT
TGTGCGCATGCGCCTGCGTCCCCGTATGTGTCCCCCCTT
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGCCCATGCTTCTCTCCCACACTGGGAGAA
GAGCCCAGAAAGGTCTGCCACACCAGCCTGGGGCTGGGAGCTCCATGGGT
ACTCCACTCTCCTAGATTTTTCTTTGGTTGGCATAATGAATCAGAATTTT
ACGGAACAAAATTACTAAAGGACTGTGCTCAGATTATTTCAGGACATTCA
CACTTTGCAGAAATGAAAACTTCTATCTTTAAGTCACTTCTTATCCTGCT
TTTTATCTTTCTGAACTTTAAAATCAACTCCCATGAAGTCCATGAGAAGG
TTGCTTGCCCTAGTCAGCAATCAGCTGCAGATCAAGTAAAGGATGTAAAG
GATGTGTCTCAGTTAGGGCTTTACTACTGTGGTGAACACCATGACCAAAA
GCAAGGTGCAGAGGAAAGGCTTAGCTTGTGATTTCACATCAGTGCTCAAC
AGTGAAGTCAGGGCAAAAACTCAAACAGGAGTCAGGAGCTGATACAGAGG
CCCTAGAAGGGCGCTGCTTATAGGTTTGCTTCCCATGGCTTTCTTAGCCT
GCTTCTTATAGCACCCAGCCAAGGGTAGCATTACCCACAATGAAAAGGTT
TTCCAACATCAATCACTAATTACAAAAAAATGTCCTAAAGGATTACTTGC
CTGTATAGCCTGAACTTAAGGGGATCATTTTCTCAACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_m04.g1 MSMg01no155_m04.g1 CHROMAT_FILE:
MSMg01no155_m04.g1 PHD_FILE: MSMg01no155_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:44 2005
         (571 letters)



>mm_chr7_91813123_91814093
          Length = 971

 Score = 1073 bits (555), Expect = 0.0
 Identities = 567/571 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcccatgcttctctcccacactgggagaagagcccagaaaggtctgccacaccagcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcccatgcttctctcccacactgggagaagagcccagaaaggtctgccacaccagcctg 260

                                                                       
Query: 61  gggctgggagctccatgggtactccactctcctagatttttctttggttggcataatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggctgggagctccatgggtactccactctcctagatttttctttggttggcataatgaa 320

                                                                       
Query: 121 tcagaattttacggaacaaaattactaaaggactgtgctcagattatttcaggacattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagaattttacggaacaaaattactaaaggactgtgctcagattatttcaggacattca 380

                                                                       
Query: 181 cactttgcagaaatgaaaacttctatctttaagtcacttcttatcctgctttttatcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactttgcagaaatgaaaacttctatctttaagtcacttcttatcctgctttttatcttt 440

                                                                       
Query: 241 ctgaactttaaaatcaactcccatgaagtccatgagaaggttgcttgccctagtcagcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaactttaaaatcaactcccatgaagtccatgagaaggttgcttgccctagtcagcaa 500

                                                                       
Query: 301 tcagctgcagatcaagtaaaggatgtaaaggatgtgtctcagttagggctttactactgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagctgcagatcaagtaaaggatgtaaaggatgtgtctcagttagggctttactactgt 560

                                                                       
Query: 361 ggtgaacaccatgaccaaaagcaaggtgcagaggaaaggcttagcttgtgatttcacatc 420
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 ggtgaacaccatgaccaaaagcaaggtgcagaggaaaggcttggcttgtgatttcacatc 620

                                                                       
Query: 421 agtgctcaacagtgaagtcagggcaaaaactcaaacaggagtcaggagctgatacagagg 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgctgaacagtgaagtcagggcaaaaactcaaacaggagtcaggagctgatacagagg 680

                                                                       
Query: 481 ccctagaagggcgctgcttataggtttgcttcccatggctttcttagcctgcttcttata 540
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccctagaagggtgctgcttataggtttgcttcccatggctttcttagcctgcttcttata 740

                                          
Query: 541 gcacccagccaagggtagcattacccacaat 571
           ||||||||| |||||||||||||||||||||
Sbjct: 741 gcacccagctaagggtagcattacccacaat 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)