BAC Information

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BAC

Clone NameMSMg01-157M14
Chromosome7 (Build37)
Map Location 123,721,855 - 123,819,451
singlet/doubletdoublet
Overlap geneEG668484, LOC668485
Upstream geneSox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320
Downstream geneLOC546993, LOC100043330, Xylt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157M14.T7 (MSMg01no157_m14.b1)MSMg01-157M14.TJ (MSMg01no157_m14.g1)
ACCAG358173AG358174
length735740
length of high quality
(start - end)		317 (32 - 348)286 (64 - 349)
definitionCHROMAT_FILE: MSMg01no157_m14.b1 PHD_FILE: MSMg01no157_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:12 2005CHROMAT_FILE: MSMg01no157_m14.g1 PHD_FILE: MSMg01no157_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,721,855 - 123,722,165)(123,819,166 - 123,819,451)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAAGTGAC
CACTATTTGCTTATAGGAGATTCCACTAGGTTCCTCCCAGGGACCTAGCA
ATGGCTTACATCACCACCTGCAGCCATTACCTGCCCATGTGGCTTATAAA
AGGACTCCTTGCCATTCCAGCTCTTTCTTTTTCTTTTTCTATTCCCATGT
GTTCCAGGCCAGTCTCTCTCCCCACCCCCTATCATGCTCTTCCTCTCCCT
CTCCTTCCCACTCCCCTCTCCTCTCCCCCTCTCCCTCCCCCTCTCTCCCT
CTCTGTCCCCCTTCTCTGCCCTCATGGCTCTGCTCCCATCTGTTTGTTTT
TTTTCCCCCCTCTCCCCCCTTCCCCCAAATAAAATTCCTTTATATCAAGN
CTGTGATGTGAAAAAGAATTCTCAGGGGACAACCTTGGCATGGGCACGAC
AGTCACCCCCTTGCCACTGCATTGTATTTTATAACAACCACTGGACCCAA
TGCCACTTTATAGGGCTCTAAACACTGAATGGGGCTATAACCCCAATGCC
TCACCATCACACCACTCCCTTCCCCTCCCCTTTAAGAAGCCCCTCCCCAG
CCCAGCCTGGTAACTTCACTGAGTCCCCCCTCCTGTGAGGTTGGTGAAAC
TGTCTGAGCGCTGCCCCCAATATACCTGCCTTTATACTTTAATTTGGCTC
AATTCCATTTATTGGAGAATGAAATTTAATGGAAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATTCATTTGCCAGGTGCCCTGGGAACTCTTTGATTTC
CCCCAAGACTTGACCACATTCTTCTGTTATTGCAGGAAGCAGTTAGTCCC
CACCACACAGACTAACAATGAAATGGGAGACAGACCCCAGGTCTAGTCAC
AAAGGTTAGAAGCCAGGCATATCAGAGAGTCTGGGAAGATGACTCGAGGT
GTAAAGTGCTCGCTACACAAGAATAAAGACGTGGGTTCAGGTCCCCAGGA
CCTTTGTGAAAGCCAGGTGAAGTGGTGTACATTTGTAAGCCAGCACTGCT
TAGGTGATAGCCCCCCGCTCACGGCTTGCTGGCCATCCAGCCACATCAGT
GAGCTCCCGGGTCAGAAAGAGACTCTGTCTCAAAAATAACTAAGATGGAG
AGCAACTATAGACATCAGGGAAGCTGGAGAGATGACTCAGTGGGTTAAGA
GCAGTGACTATTCTTCTAGAGGACCTGAGTTCAATTCCCACCACCCACTT
GATAACCCTCAACTGTCTGGAACTCCAATTCCAGGGCATCTAACACCCTC
CCAAAGAAATATACACAGAACAAAAAGACACCAATGCACAGAAGACACCT
GGCATCAACCTCTGGCTTGCCATACACAATACACACACACACACACACAG
ACATGCATACACAGACACATACATACACATACTCAAACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_m14.b1 MSMg01no157_m14.b1 CHROMAT_FILE:
MSMg01no157_m14.b1 PHD_FILE: MSMg01no157_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:12 2005
         (317 letters)



>mm_chr7_123721651_123722367
          Length = 717

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaagtgaccactatttgcttataggagattccactaggttcctcccagggacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaagtgaccactatttgcttataggagattccactaggttcctcccagggacc 264

                                                                       
Query: 65  tagcaatggcttacatcaccacctgcagccattacctgcccatgtggcttataaaaggac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagcaatggcttacatcaccacctgcagccattacctgcccatgtggcttataaaaggac 324

                                                                       
Query: 125 tccttgccattccagctctttctttttctttttctattcccatgtgttccaggccagtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccttgccattccagctctttctttttctttttctattcccatgtgttccaggccagtct 384

                                                                       
Query: 185 ctctccccaccccctatcatgctcttcctctccctctccttcccactcccctctcctctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctccccaccccctatcatgctcttcctctccctctccttcccactcccctctcctctc 444

                                                                       
Query: 245 cccctctccctccccctctctccctctctgtcccccttctctgccctcatggctctgctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccctctccctccccctctctccctctctgtcccccttctctgccctcatggctctgctc 504

                      
Query: 305 ccatctgtttg 315
           |||||||||||
Sbjct: 505 ccatctgtttg 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no157_m14.g1 MSMg01no157_m14.g1 CHROMAT_FILE:
MSMg01no157_m14.g1 PHD_FILE: MSMg01no157_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:12 2005
         (286 letters)



>mm_chr7_123819089_123819774
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatttgccaggtgccctgggaactctttgatttcccccaagacttgaccacattctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 attcatttgccaggtgccctgggaactctttgatttcccccaagacttgaccacattctt 304

                                                                       
Query: 61  ctgttattgcaggaagcagttagtccccaccacacagactaacaatgaaatgggagacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctgttattgcaggaagcagttagtccccaccacacagactaacaatgaaatgggagacag 244

                                                                       
Query: 121 accccaggtctagtcacaaaggttagaagccaggcatatcagagagtctgggaagatgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 accccaggtctagtcacaaaggttagaagccaggcatatcagagagtctgggaagatgac 184

                                                                       
Query: 181 tcgaggtgtaaagtgctcgctacacaagaataaagacgtgggttcaggtccccaggacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tcgaggtgtaaagtgctcgctacacaagaataaagacgtgggttcaggtccccaggacct 124

                                                         
Query: 241 ttgtgaaagccaggtgaagtggtgtacatttgtaagccagcactgc 286
           ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 123 ttgtgaaagccaggtgaagtgatgtacatttgtaagccagcactgc 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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