BAC Information

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BAC

Clone NameMSMg01-158J14
Chromosome7 (Build37)
Map Location 104,732,835 - 104,733,112
singlet/doubletsinglet
Overlap geneRsf1
Upstream geneOdz4, Nars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik
Downstream geneLOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158J14.T7 (MSMg01no158_j14.b1)MSMg01-158J14.TJ (MSMg01no158_j14.g1)
ACCAG358770AG358771
length714720
length of high quality
(start - end)
308 (48 - 355)278 (79 - 356)
definitionCHROMAT_FILE: MSMg01no158_j14.b1 PHD_FILE: MSMg01no158_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:08 2005CHROMAT_FILE: MSMg01no158_j14.g1 PHD_FILE: MSMg01no158_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGGATGGCTGGTTCAACTCAGCTGTTCTGACCCAAACTTTTCT
CCAAGCTGACTGACTCATACTGCCTTCTCTCAGCTTATGACCAAATTGCT
CTGTTTGGCCTCAAACTGACTCTGGCAATCTGTTCTAATCTTCTGGCTCC
TTCTCAATCTCTGGCTCATTCTGTCTTTAGCTGTAACCTGTCTCTGTAGA
ACTGTCCTGGTAAAACTGTCATATCTATCTATCTATCTATCTATCTATCT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATCTGTTGTTTTCTTACCCCCCTTCTCTTTGTTGTCTGTTCTCATGAG
AGTTGGGCATACCCCATCTCTGACTCATTCTGTCAAATCTTTTTCTGATT
TGTCACTTTGTCTGCCCCTAATTAGTCACATCCAAACATGGCTACTTCCT
TCTACGAACTAACTTTACCTTCATTGTTTGGAATTCAAGGTGTGTACTAA
GGTCATGTCTGTATTCCAGCCAGAGATGGTAAAGGCGTACTATTCCAGCT
GGATCCCACAGGCCTAGAATGTCTTTGGATGAGATCCCTTTACCAGAGTA
GCCATGTTGCTGGATTAAAATTCCTCTACACACCCCAAGACCATCTGTCC
AGCGATGTTACTGC
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGGCAAGGATTAGCTCTTA
AAAGTTATTCTTAGACTTCCAAACGATGCTATGCATGTGCCCCTATGTTG
TTCACACAGACACACACAGAAAAAGATGTGACACTTAGCAATATGACAAA
AATCAATGTCCACCCATCTATATCCCACAGTCACCTACTTCCTGTTAGGA
AAAAGTATGCCGGTTCCATAGTAAATACAGACCTGGGTGGTGAAGAGCAA
AGCGTGCAATGCCTTCATCTATAATGCCCGTTTCTTATTCTAGCATCAAC
TATGAGTCCTTCCTTGGTCGACACTTTACGCCAGACTTTTCAAACCGCAG
TCTGAATAACACCAATGCCCACGAATATTATGCCTTTGTCTTAATTTCTT
TTCCTTGAAATATGAACAATACAGTTGTTCGTTCTTCCTTGGCCTAAAAC
TTAATAGTCTCTAAAGCAGCAATTCCCAAGCATTTTAGTTAGATTCCTGA
TACCCACAATGTCTCATTAATTTTCTTAGAGCAGCCCTAAGCCCAATATT
TAAAAAAAAAAAAAAAAATTCACATCAGTTCCACTTATTAGGTACTTGGA
AACCATTTGACAAGTAAATCTCGGGGTTGGAAAAATGCTTCAGCGGTTCA
CAGCCTTGTTCTTGCAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_j14.g1 MSMg01no158_j14.g1 CHROMAT_FILE:
MSMg01no158_j14.g1 PHD_FILE: MSMg01no158_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:08 2005
         (278 letters)



>mm_chr7_104732635_104733312
          Length = 678

 Score =  507 bits (262), Expect = e-148
 Identities = 274/278 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaggcaaggattagctcttaaaagttattcttagacttccaaacgatgctatgcatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aaaaggcaaggattagctcttaaaagttattcttagacttccaaacgatgctatgcatgt 419

                                                                       
Query: 61  gcccctatgttgttcacacagacacacacagaaaaagatgtgacacttagcaatatgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gcccctatgttgttcacacagacacacacagaaaaagatgtgacacttagcaatatgaca 359

                                                                       
Query: 121 aaaatcaatgtccacccatctatatcccacagtcacctacttcctgttaggaaaaagtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 358 aaaatcaatgtccacccatctatatcccacagtcacctacttcctgttaggaagaagtat 299

                                                                       
Query: 181 gccggttccatagtaaatacagacctgggtggtgaagagcaaagcgtgcaatgccttcat 240
           |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 298 gccggttccatagtaaatacagacctgggtggtggagagcagagcgtgcaatgccttcat 239

                                                 
Query: 241 ctataatgcccgtttcttattctagcatcaactatgag 278
           ||| ||||||||||||||||||||||||||||||||||
Sbjct: 238 ctagaatgcccgtttcttattctagcatcaactatgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)