BAC Information

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BAC

Clone NameMSMg01-159A16
Chromosome7 (Build37)
Map Location 106,502,672 - 106,502,983
singlet/doubletsinglet
Overlap genenone
Upstream geneTsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1
Downstream geneGdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159A16.T7 (MSMg01no159_a16.b1)MSMg01-159A16.TJ (MSMg01no159_a16.g1)
ACCAG359088AG359089
length745793
length of high quality
(start - end)
318 (43 - 360)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no159_a16.b1 PHD_FILE: MSMg01no159_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:41 2005CHROMAT_FILE: MSMg01no159_a16.g1 PHD_FILE: MSMg01no159_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTAGGTGAGGCCTGTTGTTTTAGGATCCTCCTATCTTCTGATAGTGG
AATGACAGACAACAGATGGACATCACTAGAGAGGAGGTGGAGTGAGAGGC
TTTTCCCCCTCTTTTCAGTGCACTGGGGCTGGAACCCAGATCCTCAGGAA
AACCAGGAAAGAAGGCATCCTGCCACTGAGCCCCAGCCCCAGCCCCAGAG
AGACCCTGTAGGCATTCACTCACATTCAAGCAACAGACTCATAAGTATTT
TCCTTCTTCCAGATGCAGAGCCTGTGGAACAGATGTATCCTTGCACTCAG
CATCCCATTTTATGATTTCTCTCGCCCCACCAGAGAACAGTGGGGGAGGG
AATGGACCCCCAGCCCCCCCCACTACAAAAAGAGGAAAATATTAGATCCT
AACAGACTTATACCCCAATCAAAGGATCAGAGAGTATACGGATTTGCAAG
TGACTGCCACAGATGATAATCTCATTCAGAAGCCCCACAATGTCTTTGAA
CTTCGTGAAGGGAATCTTAGCTTGGTAGGATCTCAGAGCCTAAGGTCTTG
AGAATAATAATATAAAATCATGGTACCTGGCCTAGCGTCATATGCCTGAT
GGTCCAGGATGCTGGATACACTGAGTCAAGGTAAACCTACAGTACATGCT
TAGGACTTCCGCCCTATCTGTATACTTAGTATCTTTATGTATGCN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGATATCCAGAAGAGCAGTCAGTGCT
CTTAACTGCGGAGCCATCTCTAGCCCGAAATTACATATTTTTGAACTCAT
GTTTTCAGAGTTATTCCTCACAGCTTTAAGGTCTGTCCTGAAGGTCATAA
CATTTACCATTTTTCCTAAGGACATAGACATACCCTTGGTTCCTAGACTC
AGGTTGTCTCTGATTATCATGAAGCCATTAATTAACCTGGGCAGAGAGGA
CATTCCCAATAACCTTGGCTTGCAGGGAGAATATTTCCCTAAGGAGAAAC
AGAATAGAAGTGTTTTTTTTTCCCCCCACCCCCCTATGTATATGTATGTG
TATGTGTATGCGTCTCCCCCCCCCAAAAAAAAAAAAAATATTTCCGGGGC
CCCTTTTTTTTTTCTTCTTTTTTTTTCTCCCCCCCCTCCCCCTTTTATTT
TTTATTTTCCCCCCACCTACTATTATATTTTTATTTATTATTTAAAAATC
CATTTATCTCTTTTTTTTATATTATTCCCCCCCCCCTCATATTCTCTATA
AATATTTAATTATTTTTTCTATCTCTCCCCCCCTATTTTTATTTTATATT
ACACATTTCCCTCTCTCTTCTGTTTTTCCTTCTATTTTCTTTTCTACCAC
CCACCCATTTTATTTTATTTCTTTTCTCTTTCTTCTTCTCCCCCCCTATA
TTCACTTTTATATACATTTTTATATATACCTCACACCACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_a16.b1 MSMg01no159_a16.b1 CHROMAT_FILE:
MSMg01no159_a16.b1 PHD_FILE: MSMg01no159_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:41 2005
         (318 letters)



>mm_chr7_106502469_106503186
          Length = 718

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtaggtgaggcctgttgttttaggatcctcctatcttctgatagtggaatga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtaggtgaggcctgttgttttaggatcctcctatcttctgatagtggaatga 263

                                                                       
Query: 64  cagacaacagatggacatcactagagaggaggtggagtgagaggcttttccccctctttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagacaacagatggacatcactagagaggaggtggagtgagaggcttttccccctctttt 323

                                                                       
Query: 124 cagtgcactggggctggaacccagatcctcaggaaaaccaggaaagaaggcatcctgcca 183
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 cagtgcactggggctggaacccagatcctcaggaaaaccaggaaagaaagcatcctgcca 383

                                                                       
Query: 184 ctgagccccagccccagccccagagagaccctgtaggcattcactcacattcaagcaaca 243
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 384 ctgagccccagccccagccccagagagaccctgtatgcattcactcacattcaatcaaca 443

                                                                       
Query: 244 gactcataagtattttccttcttccagatgcagagcctgtggaacagatgtatccttgca 303
           ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 444 gactcataagtattttctttctcccagatgcagagcctgtggaacagatgtatccttgca 503

                       
Query: 304 ctcagcatccca 315
           ||||||||||||
Sbjct: 504 ctcagcatccca 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)