BAC Information

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BAC

Clone NameMSMg01-159F12
Chromosome7 (Build37)
Map Location 31,824,525 - 31,824,665
singlet/doubletsinglet
Overlap geneFxyd5
Upstream geneZfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162
Downstream geneFxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337, LOC546949, LOC100043836, EG626305, EG668342, EG626330, LOC100043340, LOC100043343, EG626358, LOC668351, EG384593, LOC100043351, LOC100043352, LOC100043353, EG384594, LOC100043838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159F12.T7 (MSMg01no159_f12.b1)MSMg01-159F12.TJ (MSMg01no159_f12.g1)
ACCAG359307AG359308
length716717
length of high quality
(start - end)		312 (49 - 360)141 (107 - 247)
definitionCHROMAT_FILE: MSMg01no159_f12.b1 PHD_FILE: MSMg01no159_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:03 2005CHROMAT_FILE: MSMg01no159_f12.g1 PHD_FILE: MSMg01no159_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATAAGAATGCTACTTATTCAGGTGAAATGCCTCCAGTGTTG
ATAGACAGATAGTAAAAGAAATCAGGCATTGCAACTTACTGGATAGAGTT
AGAAATTTCAGGGCAAGTTCAATAAAGTAAACTTAGAATTATCATTATAG
TTATGCATGGCAGACTACATAATAGAAGAAAGTTGGTGGACTTCTCTGAT
AAATGGAAGTTCCCCACAGATACTTATAATAACAGCTGAGTCACTCCCAT
ACACAGGAATTTACAATGGCCTAGGAAGAAGATGGGTTATACAATAGACT
AGAATTGTATTTTTGTCTCCCGCCCCACCCCCTTGCCCCTGGCTTCTAAG
AATAAGCTGACTTTACATAGGACTGATTTTTTATCTCAGTTGTAAACACT
ACCTGGTTCCTGCCAGTTTCCATGTACGCATTTTTCTGTTTTGTTTGAAG
AGTCATTATGCACCAGATGACCTTAATGTATCTTGGCTGGTATATTACCT
AACTTCCTTGTTTTCTTCCGTAATGATTATATAAGTCTGATGCTTGCTTT
GAAAGATTACTCTCAGATTCAATACTCTCTTATGTTCCTGTCTGTTTGTC
ACTCACCACCTCCTTGCCCACCTGAGTGACAACATTCCCGATTCTTCCCT
GGGTTGAGACACTCTG

ATCAATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGTTCCTTGATAACCACTCAT
GTAGGATGCCTGGATCTCCCTTGCCTCCACACCCATTAGCAGGACTCAAA
CGCCTTCCCTGGAAAAAAGGTGTTTGACTCAGTTTCCCAAACCTCCCTGA
CCACAAACCACTATTGCCTGCTCTAATCAGGTCTGCTGGGCCAGGCATGA
AGGGGTGCCTGTCAGCCCAGCACTCAGGGGCTGGGTCCTGGTTGGAGACT
CCTCCTCCTCTGACATCAAACAGGGCAACTGATGGCAAAGCAAGATGGAG
CTTTAGCTGGTTGGTATGACTGACCCCCACACAGAACAACTGGAAGCAAG
AGTTGGTACTAGGTTCCTCGAAGAAGCTTTTAAGCACCTAGATCAAGCCA
TTATTGAATCTTTATCCCTGATTTTTTTTTCCTCCCAGTTACACAAATGA
AAATTTCCCTCTTTGACCTAAGCATGGTGGTGGGGTTGCCCATGGTGAAA
ATTTCATTGACCACTTTCCTTTCCTTTCCTTTCTTTTCTTTTAAAAGATT
TACTTGTTTTATGCAGGGGAAGGATCACTTTGTATCTATCTTCAAAAACA
TTGTAAGAGGCCTTCAAAACCCCTTTGAAAATGGTTGCCGGTTTGGCTGC
CTAATTGATTTATGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_f12.g1 MSMg01no159_f12.g1 CHROMAT_FILE:
MSMg01no159_f12.g1 PHD_FILE: MSMg01no159_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:03 2005
         (141 letters)



>mm_chr7_31824325_31824865
          Length = 541

 Score =  250 bits (129), Expect = 4e-71
 Identities = 138/141 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctggatctcccttgcctccacacccattagcaggactcaaacgccttccctggaaaa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tgcctggatctcccttgcctccacacccattagcaggactcagacgccttccctggaaaa 260

                                                                       
Query: 61  aaggtgtttgactcagtttcccaaacctccctgaccacaaaccactattgcctgctctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggtgtttgactcagtttcccaaacctccctgaccacaaaccactattgcctgctctaa 320

                                
Query: 121 tcaggtctgctgggccaggca 141
           ||||| || ||||||||||||
Sbjct: 321 tcaggactcctgggccaggca 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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