BAC Information

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BAC

Clone NameMSMg01-160H06
Chromosome7 (Build37)
Map Location 98,061,779 - 98,062,086
singlet/doubletsinglet
Overlap genenone
Upstream genel7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
Downstream geneDlg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160H06.T7 (MSMg01no160_h06.b1)MSMg01-160H06.TJ (MSMg01no160_h06.g1)
ACCAG360121AG360122
length739759
length of high quality
(start - end)
314 (50 - 363)246 (78 - 323)
definitionCHROMAT_FILE: MSMg01no160_h06.b1 PHD_FILE: MSMg01no160_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:25 2005CHROMAT_FILE: MSMg01no160_h06.g1 PHD_FILE: MSMg01no160_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTTTTATAGTGACTTTATCCAAAATCACTCATACAGAATT
TCAGAGCTTACTGCTGCCTTGAAAGTAAATCACCTCAATAAAGATTGCTT
GGAAATTTAAAAAAATCACTGAGACATACATGCTCAAATATTTGCATTAT
AAGAGCATAGAAATCAGTAATGCAGCTTTTCATTCAGCTAAATCAGAAAC
GCCAGTGTGGTTGATAAAATCAAATCAGATTGTATGATAACATTCCGCTA
GCCTAATGGAACAGATAGCACCCCCCGGAGCTTGTATCTCTAGCTGCATA
TGTATCAGAAAATGGCCTAGTTGGCCATCAGTGGAAAGAAAGGCCCATTG
GTCGTGCAAACTTTGCATGCCTCAGTACAGGGCAACGCCAGGGCCAAGAA
GTGGGAGTGGGAGGGTGGGAGAGTTTTTNTTTTTTNTTTTTTCTTTTTTT
GTTNTTTTTTTTGGTTTTTTTTCTTTTTTCCCCCCCTTCTTTTCCTCCCT
TCCCCTCTTTATCTGTCTCTCTTTCCCCCCTTCCCCGCTTCCCCTTTTTC
TCCCTCCTTTCCCCCCCCGCCTTTCTGGTTTGGCGTCCCTCGCGTTTCCT
TCTTGCCTCCTTTTCCCTCCCGCCTTTTTCTCCCTCTCCTTTCTTGCTTC
CTTTTGCCTTCCTCCCTTTCTTTCTTTTTTCCCATCTTT
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGTAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGATTCCAGATGCCCCTCATCAGAGGAATGGATATAGAAA
ATGTGTTTCATCTACACTATGGAGTACTACTCTGTCTTTAAAAAGATTGA
TTTTATGAAATTTCTACCCATATGGATGTACCTTGTAGTGCTTCATACTG
AGTGAATTTAATATCTATCTTTTTGATATTAATAACAATTTGCCACCAAC
TTTAAAGTTGTATATTAACTTTAAATTCATTAGTATCCCCATACTTATTT
AAATTTTTTTATCTTAATAAATTTTATTCATCATTTATATTAATCATCTT
TCTCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_h06.b1 MSMg01no160_h06.b1 CHROMAT_FILE:
MSMg01no160_h06.b1 PHD_FILE: MSMg01no160_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:25 2005
         (314 letters)



>mm_chr7_98061575_98062289
          Length = 715

 Score =  588 bits (304), Expect = e-172
 Identities = 307/308 (99%), Gaps = 1/308 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttttatagtgactttatccaaaatcactcatacagaatttcagagcttactg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttttatagtgactttatccaaaatcactcatacagaatttcagagcttactg 264

                                                                       
Query: 65  ctgccttgaaagtaaatcacctcaataaagattgcttggaaatttaaaaaaa-tcactga 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 ctgccttgaaagtaaatcacctcaataaagattgcttggaaatttaaaaaaattcactga 324

                                                                       
Query: 124 gacatacatgctcaaatatttgcattataagagcatagaaatcagtaatgcagcttttca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacatacatgctcaaatatttgcattataagagcatagaaatcagtaatgcagcttttca 384

                                                                       
Query: 184 ttcagctaaatcagaaacgccagtgtggttgataaaatcaaatcagattgtatgataaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcagctaaatcagaaacgccagtgtggttgataaaatcaaatcagattgtatgataaca 444

                                                                       
Query: 244 ttccgctagcctaatggaacagatagcaccccccggagcttgtatctctagctgcatatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttccgctagcctaatggaacagatagcaccccccggagcttgtatctctagctgcatatg 504

                   
Query: 304 tatcagaa 311
           ||||||||
Sbjct: 505 tatcagaa 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 715
Length adjustment: 9
Effective length of query: 305
Effective length of database: 706
Effective search space:   215330
Effective search space used:   215330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)