BAC Information

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BAC

Clone NameMSMg01-160J21
Chromosome7 (Build37)
Map Location 88,490,947 - 88,491,074
singlet/doubletsinglet
Overlap genenone
Upstream geneHddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17
Downstream geneCpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160J21.T7 (MSMg01no160_j21.b1)MSMg01-160J21.TJ (MSMg01no160_j21.g1)
ACCAG360241AG360242
length735720
length of high quality
(start - end)
149 (44 - 192)132 (85 - 216)
definitionCHROMAT_FILE: MSMg01no160_j21.b1 PHD_FILE: MSMg01no160_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:37 2005CHROMAT_FILE: MSMg01no160_j21.g1 PHD_FILE: MSMg01no160_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAAAATATCCAGGAATTGAGGCATATAACAAGCTAAAGGCCAGCCTG
GGCTACACAAAATCCTCTCTCAAACAAACAAACAAACAAACAAACAAACT
GAACAACAACAACAGAGGAGGAAGGAGAAAAACAGAACAGGCTTTAGACT
AAGAAGGCACAGGTGCCTTCACTTGTCCGGGAATCATGTCAGGAATAGCT
AATCAATCCCAGCATTCCGCTCACTGAAACCACAAGGCTTACTGCTATAA
GAGCCTGCTACCGGGCAGATCAAGGCTCCTTTTCAGGAGAAAACTTTTTT
TTTTAGCTCAGTTAGGTAAAATCCCGTACCGTACCCACCAAGGGAGTGAG
ATTTTGGCAGACTCTGCAACCCAAAAAAAAAAAAAAGGAGAGAGGGTGTC
CTGCAAAATNTGACGGACTTTGAAAGTGAGCTGTTAGCGCCAGCCTGATG
AATTGTGTGTTCTATAGATTGAGATGCTGGCAAAGTGGAAAATGAGGAGA
GACAAAAAGGTGAAACACGGAAAGGGGGGAAAAAAGGGGGAAAATGGGGA
AAAAAAGTAGAAAAGAAAAAGGGGGAAAAAAGGGAAAAAAAAGGAAAACA
AAAACAAACAGGGGAAAAGGGGGAAAAAACAGGGGAAGGGGGGGGGAAAA
AAAAAAAAGAGGGGGGGGAAAAAAAAGGGGGAAGG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGGTAACATACGATGCAACCCCCAGGGATT
ACAGACCCTTTGGTCTCTTCAGAATTCTTCCGGGTCCATGGTCAAGGACA
TCTTTTTTCCTCCCGCCATGAGCTACTTTTAAAGTAAGGACTTTCAGCTC
TTCACCTAACCAAAGGGACGTAAATGAGTTGAAGGATGAAGCACAGCCTT
GGCCCCTTGATACATGCCCTGTGGCCAGCACGGCCTCCTTAGGTTTGAGC
GCAGGACCCTGTCCCAGGAAACAGCTGGAGGAAAGGCCCTCTCTGGACAG
ATGATATTTTTTGGGCCCCACCGCAAAAGCCTGTTTTGGGCTTGGTTATG
GCAGAACACCCCCAAAAAGCTGAAGGTTGGAGATAGGGTCCCTACTAATC
GGAAACAGTCTAGTTAACTGAGATCCTAATTTGTTGGTAAAAGGGTTTGA
AACCTCTCTGTGAGCCAGCCACTGATTTAAGCACTCGAGGTTAGCCCTTC
CTGTTTAGCTTAAACCTAGCTGAGAAAAGTAATTGGGCTCAGACATTTAG
AAGCAGCTCGAAGGGAATACTGTGCTGGAAGGATAAAAAAAGCACCCTAG
GGGAAGTTTGCTGGGCAACCAGAAAATGACAGGAACCTCCCCATTTAGGC
TAGACCCTATAAACCCTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_j21.g1 MSMg01no160_j21.g1 CHROMAT_FILE:
MSMg01no160_j21.g1 PHD_FILE: MSMg01no160_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:37 2005
         (132 letters)



>mm_chr7_88490747_88491278
          Length = 532

 Score =  232 bits (120), Expect = 6e-66
 Identities = 126/128 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaacccccagggattacagaccctttggtctcttcagaattcttccgggtccatggtca 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 328 gcaacccccagggattacagaccctttggtctcttcagtattcttccgggtccatggtca 269

                                                                       
Query: 61  aggacatcttttttcctcccgccatgagctacttttaaagtaaggactttcagctcttca 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 268 aggacatcttttttcctcccgccatgagctacttttagagtaaggactttcagctcttca 209

                   
Query: 121 cctaacca 128
           ||||||||
Sbjct: 208 cctaacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 532
Length adjustment: 8
Effective length of query: 124
Effective length of database: 524
Effective search space:    64976
Effective search space used:    64976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)