BAC Information

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BAC

Clone NameMSMg01-161B04
Chromosome7 (Build37)
Map Location 142,784,429 - 142,784,817
singlet/doubletsinglet
Overlap genePtpre
Upstream geneLOC668750, Dock1, B830028B13Rik, EG668693, LOC100043254, Foxi2, Clrn3
Downstream geneMki67, LOC668764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161B04.T7 (MSMg01no161_b04.b1)MSMg01-161B04.TJ (MSMg01no161_b04.g1)
ACCAG360574AG360575
length1,2301,211
length of high quality
(start - end)
---389 (470 - 858)
definitionCHROMAT_FILE: MSMg01no161_b04.b1 PHD_FILE: MSMg01no161_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:16 2005CHROMAT_FILE: MSMg01no161_b04.g1 PHD_FILE: MSMg01no161_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGTCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CACGTGCCCTGATCTGAACCATCCTCGATCCGCTCCATCGAGAGGAGCGA
AAAACACTCAGCCGTTGCCTCTAGAAACAGGGGTGAGCGCGAGGCCAACT
TTGCTCATCCTGATAGACTCTACAAGTTATGGGGCTTTCATATGCATGAC
TTCCAATCTGAAGTATCTAACCGAAGATTCTACTCTGACTCGACCCCCCC
AAGTTACGCAAGACACCAGCAGAGATGTGTGACAGCTGCTGAGTTAAATT
CTGACGACAACCCCACTCTTTCTCAACAGAAGTAGCCCTTCTTTATTTCT
GAGGCACCGTTCCTCACATACCTTATTCTTTCTCTATTTAACTATGAGTT
CCATAATCCTTGCTTTTGAGACCATACACTGACTTGCTTCCTCTACCTGG
ACTACCCGGCCCTTTTTTTCCCCCCCCCCGAAAGAATCATGGTCTATCAA
AAAAAATACCAGGGGGAACATGCTTTATGTAAGCACGCTGAGTACACCTT
CCCACAGAACTTCTTTCTGACCTCAAGTAAGATCCTCCTGTCGAGCTTGA
CGAAACTGAATGTTGACATACCGAATCACCCTCTCCCTGTCATATACTTG
AACTAGTGCCCACCATGCGACCATGTAGTGCACTCACTGATCACATTCCA
CACGTCATGTGATGAAACCTGAGCGCGCAGACGTGACCCCTATGACCGCT
TTATGGCACTTGACTAGAGATTCACCCGGATCCAAAGAGACGATGCATAG
CTCTCTTTCTCCGATGTTTACCTGTGTCGATACGTATCGGACTCTTTAAT
CGGCCCTTATTACTCGCTGAAGAATATATGTCTTGCGCTGTAGATGAGTC
TTGAGTCCATCGACGCTGACTTCGCTTACTCTGATTTCCAGTGCCCCCAG
CCAAAGGGCAACAAAGTGGTTACCCCTAACTCCCCTGACCAAGAAAAGCT
TTCTTCTAAGAATAAAAGGCCAACATTTTCCCCCCGCCTTTTATTGTCGC
CTTTAAAGGGAATAAAACTTCCCCTTGTTTATAAAAAACAACTCTGTATT
TAGGAACAGCTGAAATTTCCTCCATTTACATGGCAAAAAAAAAGCCCCAA
CCATTCCTGGCCATTATTCTTTTTTTTTTCTTCCCAATGGGGTATTGTTC
TACGGGTTTGATTCCTCTTTACGTGTTGTG
NNNGGGAAGTGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACCCCCACAATCCTGTCTTGTTGGGTTATC
AGGGTAAAGCTGCCTCCGTGACCTCAGGTACCGAGACTGTGGAGCAGTCA
GGCCCTCTGCTCTGGGCCCCAGCCTTCCCTGTGTCTGTGGGCAAGACAGG
TTCTTGATGCTCCATCCTTGTTCCCTCGGACTATGGACCATAGAAGGACT
CCCAGACTCGTGGGAGGCAAACGAAAGGCAGGCACACAGCAGCCCGGCTC
TGCCCGACCTCTGACGTCTTTGCTTTCTGCCAAGGCCTAGAACCACCAGC
TGTTTATCCAGCAGCTCATGCACAGGTGAGATGATTTTCTGGCTTAAAGG
ATACGAGTTTCTTTGAAATTATGGCTGTACCGCCTGCCCAGGGAAGAGGT
TTTTTTTTCCCCCCCCCGGTGGAAGCAGAATTCAGTAAAAAAACTTCGGT
TGCATTGCAGCGTATTGTTCCGGCGTGGAGCAGGGCATACTTTTGTCATA
ATGCAGTTTTTGTTGTCGATGAATATGGCAGTGTTCTTTTCTGTGGAGGA
GGAGGAGGAAGGATTCCTGCTGAGTTCACAGAACTTTCTCAGTTGGCTTT
GGAGTGTAGGTGCATGTCCTGTGCAACACCCATCAAGGCTGGGGATGCAT
TTGCTCACAGCCCCGTGTTTTGTAAATCCTCTGGAAACGTATGTTTCATT
AGGCACTGTTTAAGCAGAGAGACACAGCTTTTCCTCCAAACGATGCAGCT
GATGCTCACTGTGCCTTCCTTCAGCTCCTTCTCTCCCTCTCTTACTGTGA
GGCTCGGTTCTGTGAATTTTACAATGGACTAGTTCCATGGCTTGAGTCAA
ACAGTTGTTGGAAGATCACTGCACCCAAATAATTTGAGGGTGCTCTTGCT
AAAAGACTACTTTGTTGGCGAATCTTCCCAAAGGGTTTCCTCCTTGTCAA
ATGTTTTTCAAAAATGTCTTAAAAACTTGCTTTTAGAAAAATCTAGTTTC
CGCCCCCCTTTTTTTTTTAAATAGAAGGTTGTAATCTCTCCCCCTGAAAA
TATTCTCCGCCCCTCTTAATATAAAGTGTTGGCGTCCTTGCTCATCCCCT
TGTCTCTCCTATTCAAGATATCCGCTCCTCTTTTAACGGACTCTTAATTT
CTTTTTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_b04.g1 MSMg01no161_b04.g1 CHROMAT_FILE:
MSMg01no161_b04.g1 PHD_FILE: MSMg01no161_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:16 2005
         (389 letters)



>mm_chr7_142784229_142785017
          Length = 789

 Score =  698 bits (361), Expect = 0.0
 Identities = 382/389 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggaagcagaattcagtaaaaaaacttcggttgcattgcagcgtattgttccggcgtgga 60
           ||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||
Sbjct: 201 tggaagcagaattcagtaaaaactcttcgcttgcattgcagcgtattgttccggcgtgga 260

                                                                       
Query: 61  gcagggcatacttttgtcataatgcagtttttgttgtcgatgaatatggcagtgttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagggcatacttttgtcataatgcagtttttgttgtcgatgaatatggcagtgttcttt 320

                                                                       
Query: 121 tctgtggaggaggaggaggaaggattcctgctgagttcacagaactttctcagttggctt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tctgtggaggaggaggaggaaggattcctgctgagttcacagaactttctcagtcggctt 380

                                                                       
Query: 181 tggagtgtaggtgcatgtcctgtgcaacacccatcaaggctggggatgcatttgctcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggagtgtaggtgcatgtcctgtgcaacacccatcaaggctggggatgcatttgctcaca 440

                                                                       
Query: 241 gccccgtgttttgtaaatcctctggaaacgtatgtttcattaggcactgtttaagcagag 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccccgtgttttgtaaatgctctggaaacgtatgtttcattaggcactgtttaagcagag 500

                                                                       
Query: 301 agacacagcttttcctccaaacgatgcagctgatgctcactgtgccttccttcagctcct 360
           ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 501 agacacagcttttcctccaaacgatgcggctgaagctcactgtgccttccttcagctcct 560

                                        
Query: 361 tctctccctctcttactgtgaggctcggt 389
           |||||||||||||||||||||||||||||
Sbjct: 561 tctctccctctcttactgtgaggctcggt 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)