Query= MSMg01no161_f06.b1 MSMg01no161_f06.b1 CHROMAT_FILE:
MSMg01no161_f06.b1 PHD_FILE: MSMg01no161_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:49 2005
(374 letters)
>mm_chr7_117048101_117048874
Length = 774
Score = 594 bits (307), Expect = e-174
Identities = 337/347 (97%)
Strand = Plus / Minus
Query: 27 tgcatactcaccatgtgtacacctcactctatgtgcagactcactgtgtgtgtacctccc 86
|||| |||||| ||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 tgcagactcactgtgtgtgcacctccctctatgtgcagactcactgtgtgtgtacctccc 385
Query: 87 tctatgtgcagactcactgtgtgtgcacctccctctatgtgcagactcactgtgtgtgca 146
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 384 tctatgtgcagactcactgtgtgtgcacctccctctatgtgcagactcacagtgtgtgca 325
Query: 147 cctccctctatgtgcagactcactgtgtgtgcacctccctctatgtgcagactcactgtg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctccctctatgtgcagactcactgtgtgtgcacctccctctatgtgcagactcactgtg 265
Query: 207 tgtgcacctccctctatgtgcagactcactgtgtgtgcacctctctccatctgcagactc 266
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 264 tgtgcacctccctctatgtgcagactcacagtgtgtgcacctctctccatctgcagactc 205
Query: 267 actgtgtgtgcacctctctccatctgcagactcatccttctgctttctccttcccctgtt 326
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 actgtgtgtgcacctctctccatctgcagactcatccttctgctttctgcttcccctgcc 145
Query: 327 ttcagtctgtatgctcagaactagcagtgctgttctccttcctggaa 373
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ttcagtctgtatgctcagaactagcagtgctgttctccttcctggaa 98
Score = 317 bits (164), Expect = 6e-91
Identities = 197/208 (94%)
Strand = Plus / Minus
Query: 93 tgcagactcactgtgtgtgcacctccctctatgtgcagactcactgtgtgtgcacctccc 152
||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 477 tgcagactcaccgtgtgtacacctcactctatgtgcagactcactgtgtgtgcacctccc 418
Query: 153 tctatgtgcagactcactgtgtgtgcacctccctctatgtgcagactcactgtgtgtgca 212
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 417 tctatgtgcagactcactgtgtgtgtacctccctctatgtgcagactcactgtgtgtgca 358
Query: 213 cctccctctatgtgcagactcactgtgtgtgcacctctctccatctgcagactcactgtg 272
||||||||||||||||||||||| ||||||||||||| ||| || |||||||||||||||
Sbjct: 357 cctccctctatgtgcagactcacagtgtgtgcacctccctctatgtgcagactcactgtg 298
Query: 273 tgtgcacctctctccatctgcagactca 300
|||||||||| ||| || ||||||||||
Sbjct: 297 tgtgcacctccctctatgtgcagactca 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 6
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space: 279225
Effective search space used: 279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no161_f06.g1 MSMg01no161_f06.g1 CHROMAT_FILE:
MSMg01no161_f06.g1 PHD_FILE: MSMg01no161_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:49 2005
(379 letters)
>mm_chr7_116905810_116906588
Length = 779
Score = 687 bits (355), Expect = 0.0
Identities = 373/379 (98%), Gaps = 1/379 (0%)
Strand = Plus / Plus
Query: 1 cttttatccataaagaatgaagctatgccatttgcaggaaaatggatgcaactggagatc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 202 cttttatccataaagaatgaagctatgccatttgcaggaaaatggatgcaactggaga-c 260
Query: 61 atcatagtgagtaaattaaaccagtttcagaaagacaaagacttgatgttttctctcttt 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 atcatagtgagtaaattaaaccagtttcagaaagacaaagaattgatgttttctctcttt 320
Query: 121 tgtgtgtcttctttcagaagggcacagacagtcagagaaacagatgacatcaggtagtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtgtcttctttcagaagggcacagacagtcagagaaacagatgacatcaggtagtga 380
Query: 181 agctgttggggcaacagtgggagctgactgagcagtgaagagtgaggaagtacatttaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 agctgttggggcaacagtgggagctgactgagcagtgaagagtgaggaagtgcatttaca 440
Query: 241 tgcctgtatgaaaacagccttatgtcatcaagattattaaaattttaattacatgtgttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcctgtatgaaaacagccttatgtcatcaagattattaaaattttaattacatgtgttt 500
Query: 301 atttatgggggcatacctgtgccgtggaatatttgtggaaatgtgagatcaaacacaggc 360
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 501 atttatgggggcatacctgtgccgtggaacacatgtggaaatgtgagatcaaacacaggc 560
Query: 361 tgtcagtttgattccaacc 379
|||||||||||||||||||
Sbjct: 561 tgtcagtttgattccaacc 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
