BAC Information

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BAC

Clone NameMSMg01-162E18
Chromosome7 (Build37)
Map Location 112,462,388 - 112,462,689
singlet/doubletsinglet
Overlap geneOlfr689
Upstream geneTrim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1, Olfr665, Olfr666, Olfr667, Olfr668, Olfr669, EG545987, Olfr670, Olfr671, Olfr672, GA_x5J8B7W6B6J-189947-189022, Olfr674-ps1, Olfr675, Olfr676, Olfr677, LOC667987, Olfr678, Olfr679, Olfr680-ps1, Olfr681, Olfr682-ps1, Olfr683, Olfr684, Olfr685, Olfr686, EG668035, Olfr688
Downstream geneOlfr690, Olfr691, Olfr692, EG545989, 4632419K20Rik, Cnga4, EG244189, Cckbr, Prkcdbp, Smpd1, Apbb1, Hpxn, Trim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162E18.T7 (MSMg01no162_e18.b1)MSMg01-162E18.TJ (MSMg01no162_e18.g1)
ACCAG361468AG361469
length681688
length of high quality
(start - end)		309 (51 - 359)280 (80 - 359)
definitionCHROMAT_FILE: MSMg01no162_e18.b1 PHD_FILE: MSMg01no162_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:37 2005CHROMAT_FILE: MSMg01no162_e18.g1 PHD_FILE: MSMg01no162_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:37 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AAAATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTATGTTCAAAAGACCACAAGATTATGGGTGAGACCTAT
ATCACTACCTTAAGGCTAGATAAAAATGAACATTTTTTATTTTTCCTCGA
TTTACAGGTAGATGCTGAGAACAAGACATCCATGAAATGGGTACTAAGCA
TGCAACCAACAGCTCAGAGTTCCAAGTCTCTGAGTTCATTCTACTGGGAT
TCCCAGGCATTCACGAATTCCAGATCTGGTTGTCCTTGCCTATGGCTCTG
CTTTACATCATAGCTCTTGTTGCTAATTTCCTTATCTTGATCACCATCTA
CCTTGATTTCTATTCTGCCCNNAGCAATGCCTCAGTTTCTTGGTATCTTG
GCTGTAGTGGATATTGCCCAAACTAACACCAGCATGCCCAAAATACTGGC
CATCTTGTGGTTTGATGCCAAGACCATCAGCCTCCCTGAGTGTTTTTCTC
AGATCTATGCTATCCACACTTTTATGTCCATGGAGTCAGGCGTCTTTCTA
TGCATGGCAATAGATAGATATGTAGCCATTTGTTATCCCCTCCAGTATCC
TTCCATAGTCACTGAAGCTTTTGTAATCAAAGCCACATTGTCCATGATGC
TCAGGAGTGGTCTGTTTACCATCCCAATGCC

NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTGTAGACCAAGACTGGC
TTCAAACTTAGATACTCCTGCTTCTGCCTCCCAAGTGTTGGGATTAAAGA
CATGTGACACCCTTTCCTTGCTTCTTTTTATTTTTTAAACCTAAATACTA
GAAAATTAAACATTGCTGGGCATAGTGGCGCACACCTTTAATCCCAGCAC
TTGAGAGGCAGAGGCTGCGAATTTCTGAGTTCGAGCCAGCCTGGACTACT
GAGTGAGTTCCAGGACAGTTCAGTGCCTCACAGAGAAACCCTGTCTCAAA
AAACCTTTTTTTTTTAACCCCANACCACCAAAATTAAAAATTATGTGCAT
TATTTTTGTGTTGGACAACGCCCAAAAATATTTTTTTTTTTTTTGTTTGT
GCCTGGCCCCAAAATTTTATTTTATTTTTTAATTTTTTTTCCATTTTTTA
TTAGGAATTTAACCCCTTTACTTTTCCAATGGTATACCAAAAGTCCCCCA
TATCCACCCACCCCCATTCCCCTGGCCACCAACTCCCCTTTTTTGGACCT
GGTATTTCCTTGGACGGGGGTCTAAAAAGCTTGCAAGTCCAATGGCCTAT
TCTTTCCCGGGGTGTTTCAAGAAGCCCTCTTTTTGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_e18.b1 MSMg01no162_e18.b1 CHROMAT_FILE:
MSMg01no162_e18.b1 PHD_FILE: MSMg01no162_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:37 2005
         (309 letters)



>mm_chr7_112462184_112462892
          Length = 709

 Score =  561 bits (290), Expect = e-164
 Identities = 299/302 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtatgttcaaaagaccacaagattatgggtgagacctatatcactaccttaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtatgttcaaaagaccacaagattatgggtgagacctatatcactaccttaag 264

                                                                       
Query: 65  gctagataaaaatgaacattttttatttttcctcgatttacaggtagatgctgagaacaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctagataaaaatgaacattttttatttttcctcgatttacaggtagatgctgagaacaa 324

                                                                       
Query: 125 gacatccatgaaatgggtactaagcatgcaaccaacagctcagagttccaagtctctgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacatccatgaaatgggtactaagcatgcaaccaacagctcagagttccaagtctctgag 384

                                                                       
Query: 185 ttcattctactgggattcccaggcattcacgaattccagatctggttgtccttgcctatg 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 ttcattctactgggattcccaggcattcatgaattccagatctggttgtccttgcctatg 444

                                                                       
Query: 245 gctctgctttacatcatagctcttgttgctaatttccttatcttgatcaccatctacctt 304
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 445 gctctactttacatcatagctcttggtgctaatttccttatcttgatcaccatctacctt 504

             
Query: 305 ga 306
           ||
Sbjct: 505 ga 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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