BAC Information

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BAC

Clone NameMSMg01-163H08
Chromosome7 (Build37)
Map Location 95,792,817 - 95,793,493
singlet/doubletsinglet
Overlap genenone
Upstream geneGrm5, Ctsc, LOC100039756, Rab38, LOC100039924, LOC666598
Downstream geneEG621562, Tmem135, LOC100039969, Fzd4, Prss23, LOC100040001, Me3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163H08.T7 (MSMg01no163_h08.b1)MSMg01-163H08.TJ (MSMg01no163_h08.g1)
ACCAG362253AG362254
length728729
length of high quality
(start - end)
681 (48 - 728)279 (79 - 357)
definitionCHROMAT_FILE: MSMg01no163_h08.b1 PHD_FILE: MSMg01no163_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:03 2005CHROMAT_FILE: MSMg01no163_h08.g1 PHD_FILE: MSMg01no163_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGGTCTACCATCATTTAATAGTGAGTGATGGTCAATCGTTTAT
TTTGTTGTATCTCTCTCAGGACTCAGTACAAGTTTGATTACATGAAATTT
ATACACACATAAACACAATGAAATTACTTTAAACAACATGAATTTTTGGA
TAGTTTTGAAAAAGTGATCCTGCTTAATTCGTTTAGGAGAAATGAGAAAA
GAAAAAGGATCTACAGATCTGAAAAGATGTGTTAGAAAATAGCATGTCTG
GATATGTTACCATTGAAGAGCTATTCGTACTCCTCTAGCTGTCCTCTGTG
GAGTCTGCTTTTCATTACAATAATAACAAATTTATCCGACACATGCTCCA
CTATGTTCATAGCACCCCTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCCCTCAACGGAGGAATGGATACAAAAAATGTGGTACATTTACAC
AATGGAGTACTACTCAGCTATTAAAACGAATGAATTTATGAAATTCCTAG
GCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAATCA
CAAAAGAACTCAAATGATATGTACTCACTGATAAGTGGATATTAGCCCAG
AAACTTAGTATACCCGAGATATAAGATACAATTTGCAAAACACATGAAAC
TGAAGAAGAACAAAGACCAAAGTGTGGA
CCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTAT
CATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGA
TGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTG
ATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTAC
TTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGA
GAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTG
AAGTTCTCTTTTTTTGTCCCCCCCCCCCCCGGTTTAGGTATCAGAGTAAT
AGTGGCTTCATAACCCCACCAGAAAAAAGAACCTTCTACTTCTATTTTGT
GAAATAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGATAG
AACTCTGCACTAAACCCATCTGGCCCTGGGCTTTTTTTGGTTGGGAGACT
ATTAATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGC
CAATTTGATCCTGATTCACCTTTGTTACCTGGTATCTGTCCCGAAATTTG
TCCATTTCGTCCCGGTTTTCCAGTCTTTGTTACCTATCATCTTCTGCCTA
AGGATCCTGAGGTTTTTTCACCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_h08.b1 MSMg01no163_h08.b1 CHROMAT_FILE:
MSMg01no163_h08.b1 PHD_FILE: MSMg01no163_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:03 2005
         (681 letters)



>mm_chr7_95792613_95793693
          Length = 1081

 Score = 1178 bits (609), Expect = 0.0
 Identities = 660/677 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggtctaccatcatttaatagtgagtgatggtcaatcgtttattttgttgtatc 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggtctatcatcatttaatagtgagtgatggtcaatcgtttattttgttgtatc 264

                                                                       
Query: 65  tctctcaggactcagtacaagtttgattacatgaaatttatacacacataaacacaatga 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 tctctcaggactcagtacaagtttgattacatgaaatttatacacacatacacacaatga 324

                                                                       
Query: 125 aattactttaaacaacatgaatttttggatagttttgaaaaagtgatcctgcttaattcg 184
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 325 aattactttaaacaacatgaatttttggatagttttgaaagagtgatcctgcttaattag 384

                                                                       
Query: 185 tttaggagaaatgagaaaagaaaaaggatctacagatctgaaaagatgtgttagaaaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttaggagaaatgagaaaagaaaaaggatctacagatctgaaaagatgtgttagaaaata 444

                                                                       
Query: 245 gcatgtctggatatgttaccattgaagagctattcgtactcctctagctgtcctctgtgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 gcatgtctggatatgttaccattgaagagctattcgtactcctctagctgtcctccgtgg 504

                                                                       
Query: 305 agtctgcttttcattacaataataacaaatttatccgacacatgctccactatgttcata 364
           |||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 agtccgcttttcattagaataataacaaatttatccgacacatgctctactatgttcata 564

                                                                       
Query: 365 gcacccctatttataatagccagaagctggaaagaacccagatgcccctcaacggaggaa 424
           ||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 565 gcagccttatttataatagccagaagctggaaagaacccagatgcccctcaacagaggaa 624

                                                                       
Query: 425 tggatacaaaaaatgtggtacatttacacaatggagtactactcagctattaaaacgaat 484
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 625 tggataaaaaaaatgtggtacatttacacaatggagtactactcagctattaaaaagaat 684

                                                                       
Query: 485 gaatttatgaaattcctaggcaaatggatggacctggagggcatcatcctgagtgaggta 544
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 685 gaatttatgaaattcctaggcaaatggatggacctggggggcatcatcctgagtgaggta 744

                                                                       
Query: 545 acacaatcacaaaagaactcaaatgatatgtactcactgataagtggatattagcccaga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acacaatcacaaaagaactcaaatgatatgtactcactgataagtggatattagcccaga 804

                                                                       
Query: 605 aacttagtatacccgagatataagatacaatttgcaaaacacatgaaactgaagaagaac 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 805 aacttagtatacccgagatataagatacaatttgcaaaacacatgaaactgaagaagaag 864

                            
Query: 665 aaagaccaaagtgtgga 681
            |||||||||| |||||
Sbjct: 865 gaagaccaaagggtgga 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)