BAC Information

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BAC

Clone NameMSMg01-163P10
Chromosome7 (Build37)
Map Location 28,170,664 - 28,170,966
singlet/doubletsinglet
Overlap geneSpnb4
Upstream geneNlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1
Downstream geneBlvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163P10.T7 (MSMg01no163_p10.b1)MSMg01-163P10.TJ (MSMg01no163_p10.g1)
ACCAG362600AG362601
length724725
length of high quality
(start - end)
312 (50 - 361)278 (80 - 357)
definitionCHROMAT_FILE: MSMg01no163_p10.b1 PHD_FILE: MSMg01no163_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:40 2005CHROMAT_FILE: MSMg01no163_p10.g1 PHD_FILE: MSMg01no163_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGGAAACAGCTCATTTCTGGGAGGAAGCATCGTCACCAGAA
GCACTCGGGCACCGAGAGAGCCCAGAGTGTCTAGGTTTAGCGCCATATGC
CACCCCCAAATACACTTATAAAAAGTCACATGAGGAGTAGATGCCCCAAA
TGGGATCTGAGCAGAAACATATGAAGTCATGAATTGTCACCAAATAATGT
AATTAAAGTAAAGCTGGAGAGGCTAGCCCAGGACGCTTATTCTCTCGCTT
TTCATTTTTGTTTTTGAAACTGGGTATCGTGTAGCCTAGGCTAGTCTTAA
ACTTGTATTTTTTCTCTTGCTCCCACCCGCGCCATTACTGTTGGCTCTTT
TGTAGCCATTTCTGTTGCTTGAGACAGGACCTCACAGTGGCTGGCTTCCA
CCTCACTCTGTAGCCAAGGACAACCACACACTCTTCCTCCTCTGCACCCC
CAAAGTGCAGCAGTTACAGGGGCGCATCACCTCTGCACCTGGACACGCTT
CTGATTTGTTTGTTTGTTTGATTTTACAATGTTGAGGATAAAACCAAAGA
TATCACATAGGCTGGGCCCTGGCCCCCCAATTTTTTTTTTAATTTAAAAA
TGTTTTTAGCTGGGCGTGGTAGTGCACGCCTTTAGTCCCAGCACTCAGGA
GGCAGAGGCAGGCGGATTTCTGAG
NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAGAATACACTGTTAAAAT
TGGAGACGTAGCTCTGCGACAGAGCACACTTGTCTAGTACGAAGGGTGTC
CTGGGTTCAGTCTCCGGTATGTTCAGCCTGTCCATATGACAGACAGGCTG
ACAGAAGATTCAGGCCGTGAATTGTCTTTGCCTAGACACATGCCTCAGTT
TAACAGAGATCCACCTGCCTTTGCTGTCCAAGTGCTGGGATTAAAGAAGT
GTGTTGCTACACTTGCTCGCTCCCCTGCTTTTAATGTATGTCTGTGTGTA
TATGGGTTCNGTAAATTGCCNTNACCANTCCTTTTTTTTTTTTTTTTTTT
TTGCGGGGGAGGGGGCGCTCAAAACAAAATTTCTCTGTATAGCCCTGGCT
GTCCTGGAACTCACGTTGTAAACCAGGCTGGCCTTTAACTCAGAGTGCTG
GGATTAAAGGCGTGTACCACCAAGCCCGGCTGAACTCAGCACTCTTAACC
GTGGAACCATCTTTCCAGGCTCTGGTAATACTCTTTTTTTTTTTAATTAA
TTAATTTATTTATGGAAGTACAATGTAGATTTCTTCAGATACCCCAGAAG
AGGGCTTCCGATTTCCTTATATATGGTTGCGACTCTTCTTGACGTATCTG
ATCATTCATTTTTTCTCCTTTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_p10.b1 MSMg01no163_p10.b1 CHROMAT_FILE:
MSMg01no163_p10.b1 PHD_FILE: MSMg01no163_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:40 2005
         (312 letters)



>mm_chr7_28170461_28171170
          Length = 710

 Score =  571 bits (295), Expect = e-167
 Identities = 302/305 (99%), Gaps = 2/305 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaggaaacagctcatttctgggaggaagcatcgtcaccagaagcactcgggcac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 204 ggaattcaggaaacagctcatttctgggaggaagcatcgtcaccagaagcactcgggtac 263

                                                                       
Query: 64  cgagagagcccagagtgtctaggtttagcgccatatgccacccccaaatacacttataaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgagagagcccagagtgtctaggtttagcgccatatgccacccccaaatacacttataaa 323

                                                                       
Query: 124 aagtcacatgaggagtagatgccccaaatgggatctgagcagaaacatatgaagtcatga 183
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 --gtcacatgaggagtagatgccccaaatgggatctgagcagaaacatatgaagtcatga 381

                                                                       
Query: 184 attgtcaccaaataatgtaattaaagtaaagctggagaggctagcccaggacgcttattc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 attgtcaccaaataatgtaattaaagtaaagctggagaggctagcccaggacgcttattc 441

                                                                       
Query: 244 tctcgcttttcatttttgtttttgaaactgggtatcgtgtagcctaggctagtcttaaac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tctcgcttttcatttttgtttttgaaactgggtatcgtgtagcctaggctagtcttaaac 501

                
Query: 304 ttgta 308
           |||||
Sbjct: 502 ttgta 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 710
Length adjustment: 9
Effective length of query: 303
Effective length of database: 701
Effective search space:   212403
Effective search space used:   212403
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)