BAC Information

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BAC

Clone NameMSMg01-164P11
Chromosome7 (Build37)
Map Location 20,344,990 - 20,345,289
singlet/doubletsinglet
Overlap geneBcam
Upstream geneLOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2
Downstream geneCblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164P11.T7 (MSMg01no164_p11.b1)MSMg01-164P11.TJ (MSMg01no164_p11.g1)
ACCAG363267AG363268
length727729
length of high quality
(start - end)		315 (50 - 364)287 (80 - 366)
definitionCHROMAT_FILE: MSMg01no164_p11.b1 PHD_FILE: MSMg01no164_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:57 2005CHROMAT_FILE: MSMg01no164_p11.g1 PHD_FILE: MSMg01no164_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NACCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAAAGCAAAACTGAGAGCCAGGTATGATGGCTCACAAGAGT
AACTTAAAACACTTGAAAGTCTGAGGCCCGAAATCACCAGGAGTTCTAGG
CCAGTCTGGACTACTTATAGCAAGACCCTGAATGAAAAGACAAGCAATCT
CTCTCAAGAGAGTTGTAATTGGAAGGTCTTGAATCAAATATCCTGTGTTC
AAATCCTAGGTTTCCTGGACAATTATGCAATTCCAGGCAACTGATTTCAC
CACTCTGGACTTGAGTTTCTTAACAGGATGGCTTTAAAGACTTAAGGAGG
TAGTCTAGTTGACTCTTTTTTTGTCTTCCACGCACCTGCACTATTCAAAC
TACTAAATACTTGTTAGGGTACACACACCAGGATGGCCTCTGACTCCTGA
GTACCATGATTAAATGTGTGTGATCCCATGGCCAGCTGGGAAAAAAAAAC
AACTGAGTTTCTCATCTGGAGGTACAGAACATCACAAACTTCAAAGAGCT
GTTGTGAACACACACACACACACACACACACACACACACACACACACACA
CACAGAGCAACAGTGCTGGACACTGTTTTCAAAGTTGGGGACAGTACATG
GTGCATCCATGGTGTTTTCCAATTTTTATTCTTTCAACAAGGTGTTAAAT
AGCCCAGGCTGGCCTCAGACCCAGCTN

NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCATGCTGGCC
TCAAAATCAGAAATCTACCTGCCTCTGCCTCTGCCTCCCAAGTGCTGGGA
TTAAAGGCATGTGCCACCACTGCCCAGCTCTAAATATTTTTCTTGTTTGT
GTGTGCATGTGTGGTATAAGTGTATATGCATTGTGTATACATGCCTGAGG
CCAGAAGTTGACTCTGGGTGTCTTTCTCTATTCCTCTCCATTTTTTTTAC
TGGGGAGGAATAGGTGTTCTGAGACAGGGATTTCACTGTGTAGCCCCATC
TGGTCTGGAATTCACTATGTAGATCCCACCGCCACTTAAGCCCACAGAGA
TGCAGTTGCCTCTGCTTCACGAGCCCCGGAATTCAAGGTGTATGCTGCTG
TGCACAGCTGTATTTTTTTTTAATGTTTATTCATTTTGGGGGGCAGTTTG
GTGGTCAGAGAACAACCTGCGGGAGTCAGCTCTCTTCCTCCAATACATCA
GTTCCAAGGACGGAACTCAGGCTGTCTGGCTTGGCGGTGTGCTCTTTTAC
CATTTGACCCTTCTTGCCATGTCCCTCCACTTTGCTTGAAACTACTAGCT
CAGTGATTAGCTTTACGCTCTGTCCGATACCTCCAGGTACCCTCTCTGTT
CTTCCTCTACCATCCTTTTGCCCTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_p11.g1 MSMg01no164_p11.g1 CHROMAT_FILE:
MSMg01no164_p11.g1 PHD_FILE: MSMg01no164_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:57 2005
         (287 letters)



>mm_chr7_20344724_20345411
          Length = 688

 Score =  514 bits (266), Expect = e-150
 Identities = 286/300 (95%), Gaps = 13/300 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaccatgctggcctcaaaatcagaaatctac------------ctgcctctg 48
           |||||||||||||||||||||||||||||||||||||||            |||||||||
Sbjct: 566 actctgtagaccatgctggcctcaaaatcagaaatctacctggctctgcctctgcctctg 507

                                                                       
Query: 49  cctctgcctcccaagtgctgggattaaaggcatgtgccaccactgcccagctctaaatat 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cctctgcctcccaagtgctgggattaaaggcatgtgccaccactgcccagctctaaatat 447

                                                                       
Query: 109 ttttcttgtttgtgtgtgcatgtgtggtataagtgtatatgcattgtgtatacatgcctg 168
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 446 ttttcttgtttgtgtgtgcatgtgcggtataagtgtatatgcattgtgtatacatgcctg 387

                                                                       
Query: 169 aggccagaagttgactctgggtgtctttctctattcctctcca-ttttttttactgggga 227
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 386 aggccagaagttgactctgggtgtctttctctattcctctccatttttttttactgggga 327

                                                                       
Query: 228 ggaataggtgttctgagacagggatttcactgtgtagccccatctggtctggaattcact 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggaataggtgttctgagacagggatttcactgtgtagccccatctggtctggaattcact 267


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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