BAC Information

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BAC

Clone NameMSMg01-164P12
Chromosome7 (Build37)
Map Location 116,954,472 - 116,954,765
singlet/doubletsinglet
Overlap geneScube2
Upstream geneOlfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3
Downstream genePhxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246, Adm, B430319F04Rik, Ampd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164P12.T7 (MSMg01no164_p12.b1)MSMg01-164P12.TJ (MSMg01no164_p12.g1)
ACCAG363269AG363270
length727731
length of high quality
(start - end)
318 (49 - 366)570 (80 - 649)
definitionCHROMAT_FILE: MSMg01no164_p12.b1 PHD_FILE: MSMg01no164_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:57 2005CHROMAT_FILE: MSMg01no164_p12.g1 PHD_FILE: MSMg01no164_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGGTCAGCCACGGCTACACAGTCTCAATAAAAAAATAAATG
TTATGTATTGGGGTTGTATCTTAAGATTGCTATTGTAATGAAACACCACG
ACCAAAAGCACACTGGGGAAGAAGGGTTTATTTGGCTTACACTTCCATAT
CATTGTTCATCACCAAAGGAAGTTAGGACAGGGACTCAAACCTGGAGGTA
GGAGCTGATACAAAGGCCATAGAGAATTGCTGTTTACTGGCTTGCTCAGC
CTGCTTCTTAGAGAGTCCAGGATGATCACCCACAATGTGCTGGGTCCTCT
CCCATCAATCACAAATTATTAAAATGCCTCACACCCGAATCTTACAGAGG
GATTTTCTCAACTGAGATTCTCTTCTTTGCAGCGGATTCTAGATTGTGCT
AAGTTGACATCCAAACTATCTAGCATGAGCTCGTGAGATGGCTCAGCAAT
TAGAGCTCTTGTTGCTCTTGCAGAAGACCCAAGTTCAGCTCCCAGCACCC
ACAAGAGGGAAGAGTGCTGCCTTTGCAGCAGCTGTAGCTACACTACCCAT
AGCTCGTGAGTTTCCTTGACGGAATACAATGTCTCTTCTGGTCCAGGCAG
AAGATGATTAGTTTAACTACAGAAGCAAGACGGAGCTTGCTTTCTTTAGG
AAGCCTGAAGAGCTGGGCAGTGGTGGC
NCACGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACATTTCTCTCAGGGCTG
GAACTGTAGGTAGCTCCGTGGTCGACAGGCATGGGTGAGGTCCTAGACCC
AATCTCTAATTCTTCTAGGTGAAATGCGTGTGTGCATGCACACACACACA
CACACACACACACACAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGTGAGCAACTTTTACCTTTATATTCCTTCGATAG
ACCTGTAAACTAGGATAATCTATAAGTTAAAAAAAAATTCACCATCAAGT
GCTTCTGCTACAAACTAAGGAAGGGAGCTATGGTTCCTGCTACAAACTAA
GGAAGGGAGCTATGGTTCCTGCTACAAACTAAGGAAGGGAGCTATGGTTC
CTGCTACAAACTAAGGAAGGGAGCTATGGTTCCTGCTACAAACTAAGGAA
GGGAGCTATGGTTCCTGCTACAAACTAAGGAAGGGAGCTATGGTTCCTGC
TACAAACTAAGGAAGGGAGCTATGGTTCCTGCTACAAACTAAGGAAGGTA
GCTATGTTTCCTGCTACAAACTAAGGAAGGGAGCTATGGTTCCTGCTACA
AACTAAGGAAGGGAGCTATGGCTCCTGCTACAAACTAAGGAAGGGAGCTA
TGGTTCCTGCTACAAACTAATGAAGGTAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_p12.g1 MSMg01no164_p12.g1 CHROMAT_FILE:
MSMg01no164_p12.g1 PHD_FILE: MSMg01no164_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:57 2005
         (570 letters)



>mm_chr7_116954080_116955049
          Length = 970

 Score =  464 bits (240), Expect = e-135
 Identities = 286/312 (91%), Gaps = 18/312 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaacatttctctcagggctggaactgtaggtagctccgtggtcgacaggcatgggtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 agaacatttctctcagggctggaactgtaggtagctccgtggtcgacaggcatgggtgag 627

                                                                       
Query: 61  gtcctagacccaatctctaattcttctaggtgaaatgcgtgtgtgcatgcacacacacac 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 626 gtcctagacccaatctctaattcttctaggtgaaatgcgtgtgcgcatgcacacacacac 567

                                                                       
Query: 121 acacacacacacacacagagagagagagagagagagaaagagagagagagagagagagag 180
           ||||||||||||||||                | | | | ||||||||||||||||||||
Sbjct: 566 acacacacacacacac----------------acacacacagagagagagagagagagag 523

                                                                       
Query: 181 agagagagtgagcaacttttacctttatattccttcgatagacctgtaaactaggataat 240
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agagaga--gagcaacttttacctttatattccttcgatagacctgtaaactaggataat 465

                                                                       
Query: 241 ctataagttaaaaaaaaattcaccatcaagtgcttctgctacaaactaaggaagggagct 300
           | ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 464 ccataagttaaaaaataattcaccatcaagtgcttctgctacaaactaagtaagggagct 405

                       
Query: 301 atggttcctgct 312
           ||||||||||||
Sbjct: 404 atggttcctgct 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)