Query= MSMg01no164_p20.b1 MSMg01no164_p20.b1 CHROMAT_FILE:
MSMg01no164_p20.b1 PHD_FILE: MSMg01no164_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:59 2005
(317 letters)
>mm_chr7_75816801_75817517
Length = 717
Score = 596 bits (308), Expect = e-175
Identities = 311/312 (99%)
Strand = Plus / Minus
Query: 5 gaattccttataaacatcatacagttcggaactttatttcaaaattcatactgtcaactt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gaattccttataaacatcatacagttcggaactttatttcaaaattcatactgtcaactt 391
Query: 65 cttttagtttaaatgtttacacaatctgcatttaacatgatttttgatacattgtagctg 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cttttagtttaaatgtttacataatctgcatttaacatgatttttgatacattgtagctg 331
Query: 125 aaatatacctgtgtgtgggtgtgtttatattctgttcattagccctcttgatttttctct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaatatacctgtgtgtgggtgtgtttatattctgttcattagccctcttgatttttctct 271
Query: 185 cctttccctcaatgaattggtatggtgtgtttattaaagcatcatagcagtttggagaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 cctttccctcaatgaattggtatggtgtgtttattaaagcatcatagcagtttggagaga 211
Query: 245 aaaggatttttttttccgagacagggtttctctgtgtagccttggctgtcctggaactca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 aaaggatttttttttccgagacagggtttctctgtgtagccttggctgtcctggaactca 151
Query: 305 ctctgtagacca 316
||||||||||||
Sbjct: 150 ctctgtagacca 139
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no164_p20.g1 MSMg01no164_p20.g1 CHROMAT_FILE:
MSMg01no164_p20.g1 PHD_FILE: MSMg01no164_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:59 2005
(519 letters)
>mm_chr7_75671311_75672229
Length = 919
Score = 895 bits (463), Expect = 0.0
Identities = 505/519 (97%), Gaps = 1/519 (0%)
Strand = Plus / Plus
Query: 1 tcagtaagcagctgaagaaaactgtggatccctgcatggaagaattcctgcctttctttg 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tcagtaagcagctgaagaaaactgtggatccctgcatggaagaattcctgtctttctttg 260
Query: 61 tcataaggaggataaacacatggcaagttgaaatttccttaagagagcttcacagagagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tcataaggaggataaacacatggcaagttgaaatttccttaagagagcttcactgagagg 320
Query: 121 taacccaaattcagaaagacaaatgctatggtttctctcattggcagatgttagcttcag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacccaaattcagaaagacaaatgctatggtttctctcattggcagatgttagcttcaa 380
Query: 181 actttcagatgtgtgttttatttggaagaaccaacgaggtcagcaaaatgtaagggaggg 240
||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 381 actttcagatgtgtgttctatttggaagaaccaaagaggtcaggaaaatgtaagggaggg 440
Query: 241 agctggatttcaagcaatgagagaacagagtgatataaaggcctaaaaggtaatagtgga 300
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 agctggatttcaagcaacgagagaacagagtgatataaaggcctaaaagggaatagtgga 500
Query: 301 acaggaagagtcttagtgagggttttactgctgtgaacagacaccacgcaccaatacaag 360
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 501 acaggaagagtcttagtgagggttttactgctgtgaacagacaccatg-accaatacaag 559
Query: 361 tcttataaagaacatttaatttggggctggcttacaggttcataggttcagtccattatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcttataaagaacatttaatttggggctggcttacaggttcataggttcagtccattatc 619
Query: 421 atcaaggcaggaggagaatgacaaaatccaggcaggcatggtgcaggcagaactgagagt 480
|||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct: 620 atcaaggcaggaggagcatgacaacatccaggcaggcatggtacaggcagagctgagagt 679
Query: 481 tctacatcttcatctgaaggctgctagcagaatactggc 519
|||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tctacatcttcatctgaaggctgctagcagaatactggc 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
