BAC Information

Click to search

BAC

Clone NameMSMg01-165D13
Chromosome7 (Build37)
Map Location 111,008,617 - 111,009,204
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y
Downstream geneOlfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a, Dub1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165D13.T7 (MSMg01no165_d13.b1)MSMg01-165D13.TJ (MSMg01no165_d13.g1)
ACCAG363447AG363448
length731732
length of high quality
(start - end)		661 (37 - 697)640 (68 - 707)
definitionCHROMAT_FILE: MSMg01no165_d13.b1 PHD_FILE: MSMg01no165_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:18 2005CHROMAT_FILE: MSMg01no165_d13.g1 PHD_FILE: MSMg01no165_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:18 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTG
CAGACACTCACTGGTACCCTGTTTCCTTATCTGACCTGCTTTAACTGGGT
AAGCTTATGAAAAGTCTGGTGTAGAAGAGAAAGGGGAATAACCTGTGTTG
TTAGAGTTAGGGTCACTGGATCTGTACTAGGTAGTTCCCTGACAAGTTCA
CATTTACCCTGTAATCTAGCACAGAACCTTAGTTTAGGTTAGAATCAGTA
TTGTAAATTCTGGTTAAGTGAATTCTACCATTCTCACATCATTGTGAACA
TGAGAGGTACTCATCAGGGATGTAGGAATACCTCCAGAAAGACAGGTGAT
ATTTTGGGGTACAAATGCACATTTGGAGGAAGAAAAGGAAGCACCCAGTC
CTCCTTACCCACTCTACAGCCACTGCTTCAGAACCAAAGGCCTTCTCTGC
ATAGATGTGTTTCCTCTGATTGTTCTGTCATCAGAGTTTCCTCTCTTCAA
AGAAAGAATAAACTTCTTCCAGCTAAAAAGCCATGGCTTCTAAGCCACTA
GTTACCATCCATGAGAGATATTGCCTGATATTGTTTTGACTAAAGTTCTA
ATATGTAGAAATGTTCCAAAGATGATTTTTTTTTGTGACTGTGAATCTTT
TTTTGTTTTGTTTTGTTTTTTGGTTTTTTTTTCCATTTTTATTAAGTATT
TAGCTCATTTACATTTCCATGCTATTACCAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTAATGGGG
TTATTCGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGA
TATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTG
TTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTT
TGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGC
CATTGGTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGC
AAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTG
AGAGAGACACCAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATA
AAATATCTTGGCGTAACTCTAACTAAGGAGGTGAAAGATCTGTATGATAA
AAACTTCAAATCTCTGAAGAAAGAAATTAAATAAGATCTCAGAAGATGGA
AAGATCTCCCATGCTCATGGATTGGCAGGATAAACATTGTAAAAATGGCT
ATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCC
AACTCAATTCTTCAACAAATTAGAAGGAGCAATTTGCAAATTCATCTGGA
ATAACAAAAAACCTAGGATTGCAAAAAGTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_d13.b1 MSMg01no165_d13.b1 CHROMAT_FILE:
MSMg01no165_d13.b1 PHD_FILE: MSMg01no165_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:18 2005
         (661 letters)



>mm_chr7_111008413_111009471
          Length = 1059

 Score =  967 bits (500), Expect = 0.0
 Identities = 568/592 (95%), Gaps = 6/592 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgcagacactcactggtaccctgtttccttatctgacctgctttaactgggt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gaattcattgcagacattcactggtaccctgtttccttatctgacctgctttaactgggt 733

                                                                       
Query: 65  aagcttatgaaaagtctggtgtagaaga-gaaaggggaataacctgtgttgttagagtta 123
           |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||
Sbjct: 732 aagcttatgaaaagtctggtgtagaagaggaagggggaatagcctgtgttgttagagtta 673

                                                                       
Query: 124 gggtcactggatctgtactaggtagttccctgacaagttcacatttaccctgtaatctag 183
           |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 672 gggtcattggatctgtactaggtagttccctggcaagttcacatttaccctgtaatctag 613

                                                                       
Query: 184 cacagaaccttagtttaggttagaatcagtattgtaaattctggttaagtgaattctacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cacagaaccttagtttaggttagaatcagtattgtaaattctggttaagtgaattctacc 553

                                                                       
Query: 244 attctcacatcattgtgaacatgagaggtactcatcagggatgtaggaa-tacctccaga 302
           ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 552 attctcacatcattgtgaacatgagaggtactcatcagggatgtaggaattacc-ccaga 494

                                                                       
Query: 303 aagacaggtgatattttggggtacaaatgcacatttggaggaagaaaaggaagcacccag 362
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 493 aagacaggtgatattttggggtacaaatgcgcatttggaggaagaaaaggaagcacctag 434

                                                                       
Query: 363 tcctccttacccactctacagccactgcttcagaaccaaaggccttctctgcatagatgt 422
            ||||||||   ||||||||||||||||||  ||||||||||||||||||||| ||||||
Sbjct: 433 ccctccttagttactctacagccactgctttggaaccaaaggccttctctgcacagatgt 374

                                                                       
Query: 423 gtttcctctgattgttctgtcatcagagtttcctctcttcaaagaaagaataaacttctt 482
           |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 373 gtttcctctggttgttctgtcatcagagtttcctctcttcaaagaaaaaataaacttctt 314

                                                                       
Query: 483 ccagctaaaaagccatggcttctaagccactagttaccatccatgagagatattgcctga 542
           ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ccagccaaaaagccatggcttttaagccactagttaccatccatgagagatattgcctga 254

                                                               
Query: 543 tattgttttgactaaagttctaatatgtagaaatgttccaaagatgattttt 594
           ||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 253 tattgttttgac---agttctaatatgtagaaatgttccaaagatgattttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1059
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1049
Effective search space:   682899
Effective search space used:   682899
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |