BAC Information

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BAC

Clone NameMSMg01-165D24
Chromosome7 (Build37)
Map Location 24,554,168 - 24,554,822
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22
Downstream geneLOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165D24.T7 (MSMg01no165_d24.b1)MSMg01-165D24.TJ (MSMg01no165_d24.g1)
ACCAG363465AG363466
length730728
length of high quality
(start - end)		685 (38 - 722)662 (67 - 728)
definitionCHROMAT_FILE: MSMg01no165_d24.b1 PHD_FILE: MSMg01no165_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:20 2005CHROMAT_FILE: MSMg01no165_d24.g1 PHD_FILE: MSMg01no165_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:20 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAATTCTCA
CCTGAGTAACACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATC
CTTAATCATCATTGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCA
CACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGG
CGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAG
GCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGG
ACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCA
GAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGC
AGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAA
CAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGTAGTACTAC
TCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGAAAATGGATGGA
CCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCAC
ACAATATGTACTCACTGTAAAGTAGATATTAGCCCAAAACCTGGGATACC
CAAGATATAAGATACAATTTCCTAAACATATGAAACTCAAGAAAAATGAA
TACTGAAGTGTGGATACTATGCCCCTCCTN

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAAGATTTAGCACATTTATATTGATGCAAATATC
ATTTTTAAAAGACTTTTTACAAAGGAGACATCTCATGACCCCACTATATC
CAAGAAGGCTTGAATACCAAACTTAATCTCTGTCACTTATAAATAAGTGC
AGTGCCAGCTAAACTTTGGTTCTGTTTGCTTTTTGTAATAACATTCCATT
AACTCTTAAATAATAAAATACCCAATTCTTGCCAGTTTTTTTTTACTTCT
TTACATTAGGAAAGAAAAAGTACAGATATTATATAGAAAATAAATATGTA
TTTTTTTGCATTTTTTTAAAAAAATTATGAGACAATTAAAGTCTGTCATC
AGAAGTTAATACTAAGGACCACCTAATACCTACCTCTTATTTCTTGTTAT
CATAATTGAAATAAAATGTTGCCTTATTAAGAAAGAAATGAATAGAACTA
TCCACATTTGGTACTGCTGTAGTCACAATATACAAGAAATACAAATATCC
CAGATGTCCAATGTGGTGGATTGAGTAGGTATGGCCCCTTAGAGTCATGT
ATTTGAATGCTTTGCCACAGAGAACAGCACTATCAGGAGGTGTGGTCATG
TTGGAATAGCTATGGACCTCTTGGATTAAGTATGTGACTATGGGTGTGGG
CTTTGAGGTCTCCAGTGCTCAAGCTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_d24.g1 MSMg01no165_d24.g1 CHROMAT_FILE:
MSMg01no165_d24.g1 PHD_FILE: MSMg01no165_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:20 2005
         (662 letters)



>mm_chr7_24553822_24554881
          Length = 1060

 Score = 1031 bits (533), Expect = 0.0
 Identities = 628/667 (94%), Gaps = 18/667 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    caagatttagcacatttatattgatgcaaatatcattttt-aaaagactttttacaaagg 59
            ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1001 caagatttagcacatttatattgatgcaaatgtcatttttaaaaagactttttacaaagg 942

                                                                        
Query: 60   agacatctcatgaccccactatatccaagaaggcttgaataccaaacttaatctctgtca 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941  agacatctcatgaccccactatatccaagaaggcttgaataccaaacttaatctctgtca 882

                                                                        
Query: 120  cttataaataagtgcagtgccagctaaactttggttctgtttgctttttgtaataacatt 179
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 881  cttataaataagtgcagtgccagctaaactttggttctgttggctttttgtaataacatt 822

                                                                        
Query: 180  ccattaactcttaaataataaaatacccaattcttgccagttttttttta-----cttct 234
            |||||||||||||||||||||||| |||||||||||| |||||||    |     ||| |
Sbjct: 821  ccattaactcttaaataataaaatgcccaattcttgctagttttt----aaaaaactttt 766

                                                                        
Query: 235  ttacattaggaaagaaaaagtacagatattatatagaaaataaatatgtatttttttgca 294
            ||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||| |||
Sbjct: 765  ttacattaggaaagaaaaatta--gatattatatagaaagtaaatatgtatttttt-gca 709

                                                                        
Query: 295  tttttttaaaaaaattatgagacaattaaagtctgtcatcagaagttaatactaaggacc 354
            |||||   |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 708  ttttt---aaaaaattatgagacaattaaagtctgtcatcagaagttaataccaaggacc 652

                                                                        
Query: 355  acctaatacctacctcttatttcttgttatcataattgaaataaaatgttgccttattaa 414
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 651  acctaatacctacctcttatttcttcttatcataattgaaataaaatgttgccttattaa 592

                                                                        
Query: 415  gaaagaaatgaatagaactatccacatttggtactgctgtagtcacaatatacaagaaat 474
            |||||||||||||||||||||||||||||| || |||| |||||||||||  ||||||||
Sbjct: 591  gaaagaaatgaatagaactatccacatttgctaatgctctagtcacaata--caagaaat 534

                                                                        
Query: 475  acaaatatcccagatgtccaatgtggtggattgagtaggtatggccccttagagtcatgt 534
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533  ataaatatcccagatgtccaatgtggtggattgagtaggtatggccccttagagtcatgt 474

                                                                        
Query: 535  atttgaatgctttgccacagagaacagcactatcaggaggtgtggtcatgttggaatagc 594
            |||||||||||||||||||| |||||||||||| | ||||||||||| |||||||||| |
Sbjct: 473  atttgaatgctttgccacagggaacagcactattaagaggtgtggtcttgttggaataac 414

                                                                        
Query: 595  tatggacctcttggattaagtatgtgactatgggtgtgggctttgaggtctccagtgctc 654
            |||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 413  tatggacctcttggaggaagtatgtgactatgggtgtgagctttgaggtctccagtgctc 354

                   
Query: 655  aagctac 661
            |||||||
Sbjct: 353  aagctac 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1060
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1050
Effective search space:   684600
Effective search space used:   684600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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