Query= MSMg01no165_g11.b1 MSMg01no165_g11.b1 CHROMAT_FILE:
MSMg01no165_g11.b1 PHD_FILE: MSMg01no165_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:33 2005
(660 letters)
>mm_chr7_86507894_86508956
Length = 1063
Score = 1207 bits (624), Expect = 0.0
Identities = 653/664 (98%), Gaps = 5/664 (0%)
Strand = Plus / Minus
Query: 1 ttgtcataccaggggattttctagaggcaagttaaggctttgtgggtaaagaaaacaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ttgtcataccaggggattttctagaggcaagttaaggctttgtgggtaaagaaaacaatt 804
Query: 61 ccagatgatactgcgacaggatgctgaggtgacatgcttcctaagaactctctcatgtgc 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ccagatgatactgtgacaggatgctgaggtgacatgcttcctaagaactctctcatgtgc 744
Query: 121 ccaaaggaagaaaacccaggggttccttcaactccaaaagtcctgtctccacacccccac 180
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 743 ctaaaggaagaaaacccaggggttccttcaactccacaagtcctgtctccacacccccac 684
Query: 181 -cccaacttcctccttcttttaaaactgtcactcaagtcaggatcaaggccacaggaaaa 239
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 accc-acttcctccttcttttaaaactgtcactcaagtcaggatcaaggccacaggaaaa 625
Query: 240 gaaaagcctctcacatctctaacacctgcttccggggcaaacataaacacatgctctgta 299
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 624 gaaaagcctctcacatctctaacacctgcttccggggcaaacataaacacgtgctctgta 565
Query: 300 tctccggacctggcaaactctatctcaagtcagccacttacaaagagggctctcatccgg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tctccggacctggcaaactctatctcaagtcagccacttacaaagagggctctcatccgg 505
Query: 360 atgccagccagataagctcagccacccagaaggttcagctgagccagagcgagcctgccc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atgccagccagataagctcagccacccagaaggttcagctgagccagagcgagcctgccc 445
Query: 420 aggaaggacctctggcttggcaaccatccacccttagcctggtcacactgaagaccgagg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggaaggacctctggcttggcaaccatccacccttagcctggtcacactgaagaccgagg 385
Query: 480 cact---ctcattactgtggctctcacccgctacagtcacaagactaccctcagaatagc 536
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cactctcctcattactgtggctctcacccgctacagtcacaagactaccctcagaatagc 325
Query: 537 aaggaaacggtcatgacggtcaagactaggaagagaggccagagacggggttttggatgc 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaggaaacggtcatgacggtcaagactaggaagagaggccagagacggggttttggatgt 265
Query: 597 tgcctcgtgtcctaactaggaaaagttgaatgcacacacgccttctctctcttaagatga 656
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 264 tgcctcgtgtcctaactaggaaaagttgaatgcacacgcgccttctctctcttaagatga 205
Query: 657 agat 660
||||
Sbjct: 204 agat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1063
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1053
Effective search space: 684450
Effective search space used: 684450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_g11.g1 MSMg01no165_g11.g1 CHROMAT_FILE:
MSMg01no165_g11.g1 PHD_FILE: MSMg01no165_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:33 2005
(640 letters)
>mm_chr7_86410024_86411063
Length = 1040
Score = 1154 bits (597), Expect = 0.0
Identities = 631/645 (97%), Gaps = 8/645 (1%)
Strand = Plus / Plus
Query: 1 caagtcagtagcttcaacaagatcatagaaggagccgggtggtggtggcacatgccttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 caagtcagtagcttcaacaagatcatagaaggagccgggtggtggtggcacatgccttta 258
Query: 61 atcccagcacttgggaggcagaggcaggcagatctctgagttcaaggccagcctggtcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 atcccagcacttgggaggcagaggcaggcagatctctgagttcaaggccagcctggtcta 318
Query: 121 caaagtgagttccaggacagccagggctatacagagaaaccctgtctc-aaaaactaaaa 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 319 caaagtgagttccaggacagccagggctatacagagaaaccctgtctcaaaaaactaaaa 378
Query: 180 taaca----aaacaaacaaacaaagatcatagaaggaaacctcccaaaactaataaaaaa 235
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 379 taacaaaacaaacaaacaaacaaagatcatagaaggaaacttcccaaaactaataaaaaa 438
Query: 236 cacaccaatacagatatacatggggcacataggacatctgatggattcaaccaaaaaaga 295
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 439 cacaccaatacag--atacatggggcacacaggacatctgatggattcaaccaaaaaaga 496
Query: 296 accttcccatgacatatcataatgaaaagacagtgtattgaaagtttcaggacaaaaaaa 355
||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 497 accctcccacgacatatcataatgaaaagacagtgtattgaaagtttcaggagaaaaaaa 556
Query: 356 aaaaaaaaaaccatgtatctcatgacagtctgccttgctgcaagcctaaagctttagatc 415
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaaaaaaaaa-catgtatctcatgacagtctgccttgctgcaagcctaaagctttagatc 615
Query: 416 aagagattgaaacctcaagccaaataaactttcttcctttaagtgatttatctcagtatt 475
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aagagattgaaacttcaagccaaataaactttcttcctttaagtgatttatctcagtatt 675
Query: 476 tgccacagagatggaaagctgaggaacgcagatctgcatctagagtattcaaggcctccc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tgccacagagatggaaagctgaggaacgcagatctgcatctagagtattcaaggcctccc 735
Query: 536 ccaactcagtagtgaaaaaaatacatgctatgacgtagatgaactttgacaaagtgaaag 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ccaactcagtagtgaaaaaaatacatgctatgacgtagatgaactttgacaaagtgaaag 795
Query: 596 acagtcacaaatgacatatattattccatttatgtgaaatttcca 640
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 acagtcacaaatgacatatattattccatttatgtgaaatttcca 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
