BAC Information

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BAC

Clone NameMSMg01-166B12
Chromosome7 (Build37)
Map Location 38,636,395 - 38,788,454
singlet/doubletdoublet
Overlap geneEG627844, C80913
Upstream geneLOC100043874, Zfp536, LOC100043453
Downstream geneCcne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171, LOC100043467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166B12.T7 (MSMg01no166_b12.b1)MSMg01-166B12.TJ (MSMg01no166_b12.g1)
ACCAG364027AG364028
length742781
length of high quality
(start - end)		369 (47 - 415)279 (78 - 356)
definitionCHROMAT_FILE: MSMg01no166_b12.b1 PHD_FILE: MSMg01no166_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:29 2005CHROMAT_FILE: MSMg01no166_b12.g1 PHD_FILE: MSMg01no166_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,636,395 - 38,636,758)(38,788,176 - 38,788,454)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCANAAATCCGC
GGAATTCACAGTGTCTAGACCGAATGCCTATGTCCTGCTTTCTACCACCT
ACTCTGGAGCTTCCTGGGACTCTGTGGCCAGGTCTTACTGAGTCCTAGCA
ATACGGGTCTCACCTGGCCTTCTAGTCACACTGCCCCTTCCAATCTTCAT
GGATCTGACAGACTTGTGCCCGCATCTGCACTTTCAGGATTAAGTCTAGA
CTCCTCATCCCGTGTCTAAGACCTTGAGAGCTGTCTGAGTCATCGCCCCC
AGGCTCCACACACTCAGTGCCAGCCTGTCTCACTGCCCATCTCCTGTCCC
TTCCCATCTTGCTTTCATATCCCATTCCTACCTACAGTCATCCTCTGTCT
TCCTAGGTCGTGCTGATTACCCCCCCCAGGCCCAGCTCATGCATCTCCCT
CCATCAGACATTTTCCATTCCTCACAGGTATATTGCCTTCTCCTTGCTCA
GGCACCTGATTTTCTCTCACAATCCCAACCACAGGTGACACTGACTTTGT
TTCCACGCCTGATTTCTTCACCTCATCTATTTTGACACATAGCTCCCTGC
GCATTTCCTTCCCATTTGTCCGCTTTGCCCGGAACCCCACTTTATTCCCG
CCCTCTTCCCTGATATTCTCCTCCATTTTTCTTTATCCATTATCCCTTTC
CCTTTTTCCACCCCCCCCTTTTATCTCCCCCTTATTTTCCCC

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTCATCTGTTGAAAATCTTT
CCATTTTTCTTTCATGTTGGAGGATGTGTTTGCTGTGGCTATAGTAATGA
TGGATTCGTCAGTTTCTTGTTTCAAGACTTCAAGATTCTACTCTGTTGTC
TTCCACTGTGTGGCGTTTTATGCTCTATAACCTTTGTTGCTTCTTTGAAG
GCTATATGCCATCTCTCTGCCTTGCACCTCCAGCTACACCCAGCATTCTA
ACCACATTGCTGTGCCCAGATGTTCTTAAATACTGACTTACGTTGTGCTT
AGTGTCTGTTTAATATTGTCTGTGGCAATTTTAGCAACTTCTGTTGTTTG
TTACTTTTTTTTCCCCCCCCCTTCCAACAACTAACAGTTTATTTTTGTTA
TTTTCTCCCTTATTTTTTTCTATTATACCTCTTTTTTTCTTATTTTTTTT
ACTTACCGCTTTCTTCCTCTTCTATTTTCCTATTTCTACCTTTCCTTCTT
TTTCTTACATTCTTCCCCTTTTTCTACTCCTTTTTCATTCTCTTCCCTCT
TCTTTTTATTCTTTTCCCATATCCTGTCCTTCGCACTATTTTTTTATCTA
TTTATTCTACACTTTCTCTCCTCATTTTTACAAATAACATTATTATTATA
TACCTATTAATTTCCTACTTAACTTAACCTCTCATCACACTACCTTCCCC
TTTACTTTACTTTTTTGTTTTTTTTTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_b12.b1 MSMg01no166_b12.b1 CHROMAT_FILE:
MSMg01no166_b12.b1 PHD_FILE: MSMg01no166_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:29 2005
         (369 letters)



>mm_chr7_38636190_38636958
          Length = 769

 Score =  650 bits (336), Expect = 0.0
 Identities = 357/364 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcacagtgtctagaccgaatgcctatgtcctgctttctaccacctactctggagct 65
           ||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 206 gaattcacagtgtctagaaggaatgcctatgtcctgctttctatcacctactctggagct 265

                                                                       
Query: 66  tcctgggactctgtggccaggtcttactgagtcctagcaatacgggtctcacctggcctt 125
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcctgggactctgtggccaggtcatactgagtcctagcaatacgggtctcacctggcctt 325

                                                                       
Query: 126 ctagtcacactgccccttccaatcttcatggatctgacagacttgtgcccgcatctgcac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctagtcacactgccccttccaatcttcatggatctgacagacttgtgcccgcatctgcac 385

                                                                       
Query: 186 tttcaggattaagtctagactcctcatcccgtgtctaagaccttgagagctgtctgagtc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttcaggattaagtctagactcctcatcccgtgtctaagaccttgagagctgtctgagtc 445

                                                                       
Query: 246 atcgcccccaggctccacacactcagtgccagcctgtctcactgcccatctcctgtccct 305
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 446 atcgcccccaggctccacacactcagtgccagcctggcacactgcccatctcctgtccct 505

                                                                       
Query: 306 tcccatcttgctttcatatcccattcctacctacagtcatcctctgtcttcctaggtcgt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 506 tcccatcttgctttcatatcccattcctacctacagtcatcctctgtcttcataggtcgt 565

               
Query: 366 gctg 369
           ||||
Sbjct: 566 gctg 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no166_b12.g1 MSMg01no166_b12.g1 CHROMAT_FILE:
MSMg01no166_b12.g1 PHD_FILE: MSMg01no166_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:29 2005
         (279 letters)



>mm_chr7_38787976_38788654
          Length = 679

 Score =  509 bits (263), Expect = e-148
 Identities = 275/279 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtcatctgttgaaaatctttccatttttctttcatgttggaggatgtgtttgctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tcagtcatctgttgaaaatctttccatttttctttcatgttggaggatgtgtttgctgtg 420

                                                                       
Query: 61  gctatagtaatgatggattcgtcagtttcttgtttcaagacttcaagattctactctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gctatagtaatgatggattcgtcagtttcttgtttcaagacttcaagattctactctgtt 360

                                                                       
Query: 121 gtcttccactgtgtggcgttttatgctctataacctttgttgcttctttgaaggctatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gtcttccactgtgtggcgttttatgctctataacctttgttgcttctttgaaggctatat 300

                                                                       
Query: 181 gccatctctctgccttgcacctccagctacacccagcattctaaccacattgctgtgccc 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 299 gccatctctctgccttgcacctccagctacacccagcgttctaaccacattgctgtgccc 240

                                                  
Query: 241 agatgttcttaaatactgacttacgttgtgcttagtgtc 279
           ||||||||  ||||||||||||| |||||||||||||||
Sbjct: 239 agatgttcagaaatactgacttatgttgtgcttagtgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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