Query= MSMg01no166_i06.b1 MSMg01no166_i06.b1 CHROMAT_FILE:
MSMg01no166_i06.b1 PHD_FILE: MSMg01no166_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:02 2005
(604 letters)
>mm_chr7_82391805_82392808
Length = 1004
Score = 841 bits (435), Expect = 0.0
Identities = 542/623 (86%), Gaps = 72/623 (11%)
Strand = Plus / Minus
Query: 4 ggaattcatcaagattctgtcttaaaggaaaagaagaaggctcctgacctcttgactgcc 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 715 ggaattcatcaagattctgtcttaaaggaaaagaagaaggctcctgacctcttgaccgcc 656
Query: 64 atatatgtacacacacacacacacacacacacacacacacaca----------------- 106
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 atatatgtacacacacacacacacacacacacacacacacacacgcacacgcacacgcac 596
Query: 107 ---caca--cacacacacacttacttttaacaaaatatttcttatattgaatatcaagag 161
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 595 acgcacacgcacacacacac--acttttaacaaaatatttcttatattgaatatcaagag 538
Query: 162 gtctgtgtctccaccttactttccttctactaataaaaatgaaattttcttaccactaac 221
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gtctgtgtatccatcttactttccttctactaataaaaatgaaattttcttaccactaac 478
Query: 222 atcatttgatcattcccagggaaagaaaagagaacatacatttccttattcctagtaagt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 atcatttgatcattcccagggaaagaaaagagaacatacatttccttattcctagtaagt 418
Query: 282 gttgatattttgtctgcagagttgatttggtcttcccatgtcctcctagcgtgaatggct 341
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 417 gttgatattttgtctgcagagttgatttggtcttcccatgtcctcctagtgtgaatggct 358
Query: 342 tttatctctaattggtgagtggtctttatctctaattggtgagtggtctttatctctaat 401
||||||||||||||||||||||||||||||||||
Sbjct: 357 tttatctctaattggtgagtggtctttatctcta-------------------------- 324
Query: 402 tggtgagtggtctttatctctatttgacagaaacagaacttgagctttaaaaagtcgatc 461
||||||||||||||||||||||||||||||||| ||||
Sbjct: 323 ----------------------tttgacagaaacagaacttgagctttaaaaagttgatc 286
Query: 462 tgttttccagtgcttagtggctaataaagagaagtcaaaattcaaaatctcatgagtctg 521
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 285 tgttttccagtgcttagtggctaataaagagaagtcaaaattcaaaatctcatgggtctg 226
Query: 522 acttctaagccatgaactttccctttctcttcacctgattctgagacagttgataagcca 581
||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 225 acttctaagtcatgaacttcccctttcttttcacctgattctgagacagttgataagcca 166
Query: 582 cttttactctgcaagtgaatcag 604
|||||||||||||||||||||||
Sbjct: 165 cttttactctgcaagtgaatcag 143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no166_i06.g1 MSMg01no166_i06.g1 CHROMAT_FILE:
MSMg01no166_i06.g1 PHD_FILE: MSMg01no166_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:02 2005
(674 letters)
>mm_chr7_82353680_82354751
Length = 1072
Score = 1174 bits (607), Expect = 0.0
Identities = 658/675 (97%), Gaps = 4/675 (0%)
Strand = Plus / Plus
Query: 1 tagggcctctctctaaaagacaccgaaaactgcagtatgaaaatcagacctagaaatatc 60
|||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||
Sbjct: 201 tagggcctctctctaaaagacaccgaaaactgcagtgtgaaaatcaggcctggaaatatc 260
Query: 61 atttttcattagcccctccacccacctgggggactcagagaaacagtactgaaaaagcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttttcattagcccctccacccacctgggggactcagagaaacagtactgaaaaagcta 320
Query: 121 gcaagaaatactaagaagaatgactctcactctgctctttgcaaaaatgctcaccatctc 180
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 321 gcaagaaatactaagaagaatgactctcactctgctc-ttgcaaaaatgttcaccatctc 379
Query: 181 cacaaaataaactggccaggctggccaggatcgcgtcagattaatattctaaatcggttt 240
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 380 cacaaaataaactggccaggctggccaggatcacgtcagattaatattctaaattggttt 439
Query: 241 tcattgcatgcatttaggaatcctgggaggacaataaatcacacacaaacagcagaaatg 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcattgcatgcatttaggaaccctgggaggacaataaatcacacacaaacagcagaaatg 499
Query: 301 ttagcaggatgctgtcacatggagaaggaatgccaactgcctgagatctgctctgttatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttagcaggatgctgtcacatggagaaggaatgccaactgcctgagatctgctctgttatt 559
Query: 361 tctattctggaggccccacaaaaatgtcacgagccaggaaggaaagattttcaattctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tctattctggaggccccacaaaaatgtcacgagccaggaaggaaagattttcaattctga 619
Query: 421 aagcatatgtgggaaataccactttgggtaaagattctgggactttctctgtgaaaagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagcatatgtgggaaataccactttgggtaaagattctgggactttctctgtgaaaagaa 679
Query: 481 aacaggcctttgtcaaaaccaaccccactcacccaatctggttcgaagaactgagatgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 680 aacaggcctttgtcaaaaccaaccccactcacccaatctggttcgaagaactgcggtgaa 739
Query: 541 tgtcaagtgcagtgaagaaccggggcctccctctccagcatttttttagtttgtcttgac 600
|||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 740 tgtcaagtgcagtgaataacaggggcctccctctccaacatttttttagtttgtcttgac 799
Query: 601 gctt-tgatctcattgagaaatgccaagtaattattttttttaacagaatgttttctgga 659
|||| | |||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 800 gcttct-atctcattgagaaatgccaagtaattatattttt-aacagaatgttttctgga 857
Query: 660 gaacacaccaattag 674
|||||||||||||||
Sbjct: 858 gaacacaccaattag 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1072
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1062
Effective search space: 705168
Effective search space used: 705168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
