BAC Information

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BAC

Clone NameMSMg01-166L05
Chromosome7 (Build37)
Map Location 140,368,110 - 140,558,795
singlet/doubletdoublet
Overlap genenone
Upstream gene4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
Downstream geneLOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1, Adam12, A130023I24Rik, 4933400E14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166L05.T7 (MSMg01no166_l05.b1)MSMg01-166L05.TJ (MSMg01no166_l05.g1)
ACCAG364443AG364444
length762759
length of high quality
(start - end)
320 (52 - 371)277 (80 - 356)
definitionCHROMAT_FILE: MSMg01no166_l05.b1 PHD_FILE: MSMg01no166_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:17 2005CHROMAT_FILE: MSMg01no166_l05.g1 PHD_FILE: MSMg01no166_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:17 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(140,558,618 - 140,558,795)(140,368,110 - 140,368,385)
sequence
NTTATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTTAGCATGCCCTCTCCAGAAATGATGGGGGGTGCGACT
GTTTATGGAATCATGATAGACCCTAGATGACCGGGCCTGGTGTAGACAAG
TGGCTAGTGTCCAAGCCCTGAGAAATTCAGCCTGGACAACAGTGGGTAGA
CTCCAGGATGGACAGGACGCTAATGTGGTTTTAAGTTGTATTCTAAGTTT
CAGCAAAATGACTCCACCAGTGAAAGTGTTTCTTTACAAGCCAGAAGACC
AAGGCCCCATCCCAGGAAGCCATAATATAATATTACCAAATGTGGAAGCC
CCATCTATAATCCCAGCCCTCCTATGTTGCCCCCACCACAAGTATAGAGT
TGTAAAATTGCTGGAAGGCTCCCCCCCCCTTTATAAAAGAAAAAATATGT
TTCGTATGAGACACCCCCCCTTCATATAGTTATATCGATATATATTTTTC
TTTTTTGTTGCCTTTGAACCATATTTTATTTCTTATTATACCTTCTACCT
CTCCACATCTTTATATAAAAAACCTGAGTTCCCTTTTTTTTTTTTTTCTG
TTCTTTTACAACCTTTTTTCTTTTATGCTTAACACTCTGACCTGTATATC
TATTTTATTTTTTTTTGTATCTATTTTTCCACCCCCCCCCTCCTTCCAAG
ATTTTTCTTTCTTTTTTTTGTTATTTTCACTCCACACTATATATTTTAAT
TATTTTTTTTTC
NCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTCAAGGACAGAGCCTCA
TTGGCTCCACCCCAATGCTGTTGCACTACCGAGGGGATTTCTAGCACGGG
ACACTTTCAACCATGACACTTACATGAACAGCAGCAGTCTGCTGCCTTCT
CTTCTGTACTCTGGGGGCATCTGTGTCCCTGGATGGCATCCGTTGCATGG
GCTGCCAGGCAAGCTGCAATGGACCTGGGCTCTGAGCCCCAGCTCTGTGG
GAGTGTGGCAGGGAAAGTGTCTGGTTTCAGTTAGATCAGCCTCCCCTTGA
TGAAGTCTAGGAGCAGGTAGGACCCGCTGCACATGAAGGATGCTGCTTCT
CACAATTGTCTTGGGATTTGCCTCCCCCACGAAAAAAAAAAATAAATAAT
TATTTTTTTATTCACCTACCTTCTTTTTTTTATTTTACTTCCCCACCTAA
TTTTAAAACCACATACCCAACCCCCCCTATTTTAATACTACAAATTTAAT
ATTTAATCATATATTATTATTTTTTTTTTTTTTATGATCCTTAATTATTT
CTTTAATCATTACTTCCCCTCTTTTATTTTCCNATATCTTTCTTCCTCCT
TATTATTTATCCACTCTCCACCTTCCCATCAATTCTATTTACAACCATCT
CTTTTTTTTTATATCATCATCTTAACTTTTTTACTCATTATCACACCCTT
ATCCACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_l05.b1 MSMg01no166_l05.b1 CHROMAT_FILE:
MSMg01no166_l05.b1 PHD_FILE: MSMg01no166_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:17 2005
         (320 letters)



>mm_chr7_140558415_140559134
          Length = 720

 Score =  282 bits (146), Expect = 1e-80
 Identities = 170/178 (95%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttagcatgccctctccagaaatgatggggggtgcgactgtttatggaatcat 63
           |||||||||||||| ||  |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 ggaattccttagcacgcaatctccagaaatgatggggggtgtgactgtttatggaatcat 322

                                                                       
Query: 64  gatagaccctagatgaccgggcctggtgtagacaagtggctagtgtccaagccctgagaa 123
           | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtagaccctagatgacagggcctggtgtagacaagtggctagtgtccaagccctgagaa 262

                                                                     
Query: 124 attcagcctggacaacagtgggtagactccaggatggacaggacgctaatgtggtttt 181
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 261 attcagcctggacaacagtgggtagactccaggattgacaggacgctgatgtggtttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no166_l05.g1 MSMg01no166_l05.g1 CHROMAT_FILE:
MSMg01no166_l05.g1 PHD_FILE: MSMg01no166_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:17 2005
         (277 letters)



>mm_chr7_140367910_140368586
          Length = 677

 Score =  518 bits (268), Expect = e-151
 Identities = 274/276 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttcaaggacagagcctcattggctccaccccaatgctgttgcactaccgaggggatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 attttcaaggacagagcctcattggctccaccccaatgctgttgcactaccaaggggatt 260

                                                                       
Query: 61  tctagcacgggacactttcaaccatgacacttacatgaacagcagcagtctgctgccttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctagcacgggacactttcaaccatgacacttacatgaacagcagcagtctgctgccttc 320

                                                                       
Query: 121 tcttctgtactctgggggcatctgtgtccctggatggcatccgttgcatgggctgccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttctgtactctgggggcatctgtgtccctggatggcatccgttgcatgggctgccagg 380

                                                                       
Query: 181 caagctgcaatggacctgggctctgagccccagctctgtgggagtgtggcagggaaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagctgcaatggacctgggctctgagccccagctctgtgggagtgtggcagggaaagtg 440

                                               
Query: 241 tctggtttcagttagatcagcctccccttgatgaag 276
           ||||||| ||||||||||||||||||||||||||||
Sbjct: 441 tctggttccagttagatcagcctccccttgatgaag 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)