BAC Information

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BAC

Clone NameMSMg01-166P03
Chromosome7 (Build37)
Map Location 121,360,300 - 121,360,540
singlet/doubletsinglet
Overlap geneCopb1
Upstream geneArntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2, EG434228, Spon1, Rras2, LOC668451
Downstream genePsma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166P03.T7 (MSMg01no166_p03.b1)MSMg01-166P03.TJ (MSMg01no166_p03.g1)
ACCAG364607AG364608
length858746
length of high quality
(start - end)
247 (47 - 293)432 (77 - 508)
definitionCHROMAT_FILE: MSMg01no166_p03.b1 PHD_FILE: MSMg01no166_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:35 2005CHROMAT_FILE: MSMg01no166_p03.g1 PHD_FILE: MSMg01no166_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCG
CGGAATTCCCTGTGCATATTATACTTAATAAACATAACTTTGAAGAGAGT
ATCTCTTCAAATTTATATTTATATATTCCTGTTCTTATTTTTCTCCTGTA
CCAGGCTTTTAACTTCCATAAAGAAAGACTTCTTTTGTTGGACTTAGAAT
TGTTGAAGAAACTAATATACAAAATCTACTTGTTTGGCAATAAACACATC
TGCCCCTCCACGCCCCCTGCTCCCTGTGTGTGTGTGTGTGTGTGTGTGTT
GTTTTTTATTCTATTGTATAATTTTTTTTTTTATTATAAATTTCAATTCA
ATCATTTCACCTCTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCCAATAT
TTTTTTTTTTTTTTACCTCTATTTATATTCCCCCCCCCCAAAAAAAAAAA
AAAAAAAAATTTTTATTGTGTGTTTCAATTGCACTTCTTATCAATTAACA
CCAAAATATAATCTATTTTTTTTTTTTTCTTATATTTCTATTCGTTCAAT
ATTCTCTTTAATTTTCAATATGATTTTTTTCTTTTCATTCCTAATATTTT
ATATAACATATATCACATTCACATTCATATTTTATACCCATCCTCTTTTT
TTTATCATACAATAATATTCTTCCATCTCTATCAATTCCGTCTATATTAA
CCGCTCATAACCTCGTCCTCTTATATTTGTATATTTCAATCATATAATTA
ATTAAGTTTCACCCCCTACTCCCCCATCTCCTTACATAGAATATTCTTTT
TAATTATTCAGTTCTCCACCCCCTCCCCCTCATTCTTTTTACAATTGTTC
ATATTTTN
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCCAAATAAATGAAAATCAGAT
TTGACAGAGGAAGACCCCCTGAAGATCTTAGCTACCAGGAAGGAGATAGA
AATCAAGAACAAAAAAGTTGAAGTATCACTGATCCCCAACATGAGAACAG
CTTTGAGACTGGCTGAGACTGGCTGAGACATGAAAATGTCTCCAGTCCAG
AACTTCAGCCAAGCAGAGCCAATCCATCCTGTTGGCTACAGAACCCTCCT
TGTGACTTACCATGCCATCTTTTCAATTAGCAGAGAGAGAAACTTGTATT
ACACTTTGGTTATGCAGTCCAAACTATCTTATAAAAAAAGAACCCTTACC
TGCTAGAACAGAGATCTTCCCCCCACCTTTAACCCTACCAAACCTGAGCC
TCTGAGCATAATTAACCCTCCTGCCTGGCCTCCTGAGGAAAATTTTGGGG
AAAAAAAACATAGATACTTTATAAAACTGTTCATAACATGTATAACAGTG
GTTAGATTTAAATGAAACTTGCAGAGATTGCAAAATATAGGCCTACCTTG
CCTCTTAAGCCCTTTATTTTGTGTTTATTGGCATGTCCCACCTATGTTTA
CTTTCATGTTTCCCTCTCCCCCCTTTTTATATTTTAGATTTCTCTCTTAT
TTTTGATATTCTTAATTGTTTTGTTATATTGTGCCCTTCGCCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_p03.b1 MSMg01no166_p03.b1 CHROMAT_FILE:
MSMg01no166_p03.b1 PHD_FILE: MSMg01no166_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:35 2005
         (247 letters)



>mm_chr7_121360094_121360740
          Length = 647

 Score =  429 bits (222), Expect = e-125
 Identities = 237/242 (97%), Gaps = 2/242 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccctgtgcatattatacttaataaacataactttgaagagagtatctcttcaaat 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccctgtgcatattatacttaataaacataactttgaagagagtatctcttcaaat 266

                                                                       
Query: 67  ttatatttatatattcctgttcttatttttctcctgtaccaggcttttaacttccataaa 126
           |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 267 ttatatttatatattcttgttcttatttctctcctgtaccaggcttttaacttccataaa 326

                                                                       
Query: 127 gaaagacttcttttgttggacttagaa-ttgttgaagaaactaatatacaaaatctactt 185
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 327 gaaagacttcttttgttggacttagaaattgttgaagaaactaatatacaaaatctactt 386

                                                                       
Query: 186 gtttggcaataaacacatctgcccctccacgccccctgctccctgtgtgtgtgtgtgtgt 245
           |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 387 gtttggcagtaaacacatctgccc-tccacgccccctgctccctgtgtgtgtgtgtgtgt 445

             
Query: 246 gt 247
           ||
Sbjct: 446 gt 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)