BAC Information

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BAC

Clone NameMSMg01-166P19
Chromosome7 (Build37)
Map Location 148,106,888 - 148,107,202
singlet/doubletsinglet
Overlap geneNlrp6
Upstream geneKndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b
Downstream geneAthl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166P19.T7 (MSMg01no166_p19.b1)MSMg01-166P19.TJ (MSMg01no166_p19.g1)
ACCAG364637AG364638
length764771
length of high quality
(start - end)		320 (47 - 366)198 (77 - 274)
definitionCHROMAT_FILE: MSMg01no166_p19.b1 PHD_FILE: MSMg01no166_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:38 2005CHROMAT_FILE: MSMg01no166_p19.g1 PHD_FILE: MSMg01no166_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGCTCCAGCTCATACATAGCACACTTTGGTGAGTCTTTTCTG
GACCACCTACACCAGGGACTGAGTCTGAGTCCCTTGTGGGGAGCAGACTC
ATAAATGCCCTGGTTTGCAGGGTGGACATAGAAGATGGGCTTGAAATTCC
AGCACAAGACCTGCTCTAGAGGTGAGCCCAGTTAACTTGAAAGTTCTCTC
TGGAAACCACACTCACCTGGAGCAGGAGGCTCCAGCGGCATCCATGGAGT
CTTATCTCAGGATCTAACTCTCAGATGCAGAAGCTGGGAGCAGAGGTGAT
CCTTTCTGGGCTAATTTGTTCTCCTTCCCCCCCGCGAGGGTGTTTCTCAG
TCTTGTTCATTCTGGCCCCCCCCTTCTCAAGAAAGAAAACAAGAGGCTCC
CAAGTTAAGCACGGGTTGTAACATCATATATGTGCTGGACTAGCGACCTT
TGGTTTTCTTCTTATTAACTCTATAATACTCCTCCTCCTGTGTGCGTTCT
CTAATTCAACAGATTATTTCTTACTCAACTCCTATTCTCCTCACATATCT
TTCCCTCCCAAAATGCGTCGATTAGTGCTCTTATTTCCTCCATCACACAG
AAGAAATTTTTTTTTTTTTTTTTATTATTTTTCCTCCCCCCCCCCCCTCC
TAAAATGTTCCTTTTTTTTTTACTCCTCACCACCCCCCACTCTCTTCTCT
TACACTTATTGTTT

CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTT
TTAATAGGATTCATCCCATAAACAACCACCAAAACCAGACACTATTATGG
ATGCCAACAAGAGCTTGCTGACAGGAGTCTGATATAGCTGTCTCCTTGGT
CCTGTGAAGGTTCTATGCCCCAGTATAGGGGACTGCAGAGGCCAGGAAGA
GGGAGTGGGTGGGTTGGTGAGCANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTNNNNNNNNNNNNTTTTTTTCTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTCCCCCTCTCTTTTTCCTTCTCTTCTTTTT
TTTTTCTTTTTTTTATCCCCCCCCTCCNNANNAGTATAAAAATTTATAAA
TATATTATTTAATTTTTTTTTGTTATCGAGTGTATATGAATTATAATAAT
ATTTTTACCCCCTCTACTATTTGTAACATAAAAACTCCCTTCCCCTCTCT
TTCGTCCCTTTTTAAATATTTTATACCCCATATCATTCCCCCTCCTTTTA
TCTTATTCCCCTGATATGTTATATAAATTCTCTCCTTTTTTTTTTTAAAT
AACTTCTTACACCCCTTATATCTAATTCATAATACCCTACCTCTCCTCAT
TTGTATATTTCTTACTACTTTTTTTTTTACCCATTCTATATTACTTTTTT
TTAGCCCCCCCTTCTCACTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_p19.b1 MSMg01no166_p19.b1 CHROMAT_FILE:
MSMg01no166_p19.b1 PHD_FILE: MSMg01no166_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:38 2005
         (320 letters)



>mm_chr7_148106684_148107404
          Length = 721

 Score =  571 bits (295), Expect = e-167
 Identities = 310/315 (98%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgctcc-agctcatacatagcacactttggtgagtcttttctggaccaccta 63
           ||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattctctactccaaactcatacatagcacactttggtgagtcttttctggaccaccta 460

                                                                       
Query: 64  caccagggactgagtctgagtcccttgtggggagcagactcataaatgccctggtttgca 123
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 459 caccagggactgagtctgagttccttgtggggagcagactcataaatgccctggtttgca 400

                                                                       
Query: 124 gggtggacatagaagatgggcttgaaattccagcacaagacctgctctagaggtgagccc 183
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 399 gggtggacatagaagatgggcttgaaattccagtacaagacctgctctagaggtgagccc 340

                                                                       
Query: 184 agttaacttgaaagttctctctggaaaccacactcacctggagcaggaggctccagcggc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agttaacttgaaagttctctctggaaaccacactcacctggagcaggaggctccagcggc 280

                                                                       
Query: 244 atccatggagtcttatctcaggatctaactctcagatgcagaagctgggagcagaggtga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atccatggagtcttatctcaggatctaactctcagatgcagaagctgggagcagaggtga 220

                          
Query: 304 tcctttctgggctaa 318
           |||||||||||||||
Sbjct: 219 tcctttctgggctaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space:   221432
Effective search space used:   221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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