CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCGGAAATTTGCCCTGGAGGCTGATTCAACTCTTGTCAGCATTGCTG
TGCCAGACTCTACCACTCATTTGCCACTGTCAGGCACTAGCCTAGATTCT
GTATGCAAAGTACATTTTTAAAGCCCCTGTTCCTCACAGAGCCCATATCA
TGCTGGGGTTAGAGTGATGTAGCAAAGGAGATGAGTAACTCACACACCAG
GCTGGTCTAGCAGAAGACAATAGGCTCTGACGTTAAGTGTAAAATCTGAG
GCTATATCAAAATGTGAAAATTAGGATAAGTATTTTTTGAGGTGGGGATT
AGACTCAGAATTCCTATATTCTAGGCAAGTTATACCCTAAATCAAGACAA
ATAGTACCTTAACAAAGCTAAATAAGCAATAAAGAGAAATAAATAAAACT
AGTAGTGGTGACAGGGATTTGGAAAAGTAGAGAATAGAAGCTTTAACTAG
AGAAACCCCGGGAAGTGTATGTAAGGAAAGCCTGGAGCAAGGGATGAGTG
ACCTATGCAAGTACCTGGTGAAAGACTTTCTAGACAGATGGTATCCAAGA
AAAAGAATGCACTGTAAAGGGAGGGTGTCAGTGCGGGAGGTGCATAAGAT
AAGATAGGGTATAGACCACGAGGGAACGAGTGTTCGGACTCTCCAAACAG
AAACAAAACTTTACGTGTATTCTTCAGCATATTCACATTGCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCTGTAAGACCTCAGCGTGGCT
TTGTAACCATTCTTCCTTTCTGTTAGTAATGTTACAAGGGCAGGTGTCCA
GAGTGTGGATATCCTGAGAAGCCCTTCTGCTCAACCCTGATCATTAAATA
TGTGTTCAACTTCGAGCTAGCTAGCTAGGTAGACGGATGGATGAATAGAT
ACACAGACAAACAGAATGACCAATAAATGATAGAGTAGTACACAGATACT
TAGACATAATGGAAGGGGTGGATGGATGGATGGATGATGNNTNTTNNNTN
NNNTNNTTTTTTTTTTTTTTTTTTNTTTTTATTTTTTTTNNTTTNTTTTT
TTTTTTTTTTTTTTTTNTCCCCCCCTTTTCNCTTTTTGTTTCTTTTTTTT
TTTTTTATCTCTTTCTTTCCCCCCCTCCTCGTCCCCGCTCCTTCCTTTCT
GTTTTCTCTCTATGTTTTTCCGTTCTCCTCTTTCCTCTTTTTTTTTCTGT
TCTTCTTTCTCCTCGTTTTCTCTCCTCTTATTTTTCCTTTTATTTTCTAT
ATATTATCACTTATTTATCCTAATTCTAATACTACTCCCTAATTTACTAT
ACAATCCAACCCACCCACAACTATTTTCTCCACTTTATTCTCCCCGTTTC
CTCCTTTTCTTCTTTCCCACGTCCCTCTTTTCCTCACGACCCCCCTCCCC
CATTATTTAATGCTACTCGCCTCTCTCTTCCTTTTAAATTTGCTACCATT
TCCCTCTTATTTTCCCCGGCTCTATCTTCTAT

Query= MSMg01no167_f05.b1 MSMg01no167_f05.b1 CHROMAT_FILE:
MSMg01no167_f05.b1 PHD_FILE: MSMg01no167_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:03 2005
         (580 letters)



>mm_chr7_124905310_124906289
          Length = 980

 Score = 1091 bits (564), Expect = 0.0
 Identities = 573/576 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcggaaatttgccctggaggctgattcaactcttgtcagcattgctgtgccagact 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gaattcggaaatttgacctggaggctgattcaactcttgtcagcattgctgtgccagact 721

                                                                       
Query: 65  ctaccactcatttgccactgtcaggcactagcctagattctgtatgcaaagtacattttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ctaccactcatttgccactgtcaggcactagcctagattctgtatgcaaagtacattttt 661

                                                                       
Query: 125 aaagcccctgttcctcacagagcccatatcatgctggggttagagtgatgtagcaaagga 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 660 aaagcccctgttcctcacagagcccatatcatgctggggttagagtgatgtagcaaggga 601

                                                                       
Query: 185 gatgagtaactcacacaccaggctggtctagcagaagacaataggctctgacgttaagtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gatgagtaactcacacaccaggctggtctagcagaagacaataggctctgacgttaagtg 541

                                                                       
Query: 245 taaaatctgaggctatatcaaaatgtgaaaattaggataagtattttttgaggtggggat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 taaaatctgaggctatatcaaaatgtgaaaattaggataagtattttttgaggtggggat 481

                                                                       
Query: 305 tagactcagaattcctatattctaggcaagttataccctaaatcaagacaaatagtacct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tagactcagaattcctatattctaggcaagttataccctaaatcaagacaaatagtacct 421

                                                                       
Query: 365 taacaaagctaaataagcaataaagagaaataaataaaactagtagtggtgacagggatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 taacaaagctaaataagcaataaagagaaataaataaaactagtagtggtgacagggatt 361

                                                                       
Query: 425 tggaaaagtagagaatagaagctttaactagagaaaccccgggaagtgtatgtaaggaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tggaaaagtagagaatagaagctttaactagagaaaccccgggaagtgtatgtaaggaaa 301

                                                                       
Query: 485 gcctggagcaagggatgagtgacctatgcaagtacctggtgaaagactttctagacagat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gcctggagcaagggatgagtgacctatgcaagtacctggtgaaagactttctagacagat 241

                                               
Query: 545 ggtatccaagaaaaagaatgcactgtaaagggaggg 580
           |||||||||||||||||||| |||||||||||||||
Sbjct: 240 ggtatccaagaaaaagaatgtactgtaaagggaggg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no167_f05.g1 MSMg01no167_f05.g1 CHROMAT_FILE:
MSMg01no167_f05.g1 PHD_FILE: MSMg01no167_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:03 2005
         (263 letters)



>mm_chr7_124797728_124798390
          Length = 663

 Score =  485 bits (251), Expect = e-142
 Identities = 260/263 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctgtaagacctcagcgtggctttgtaaccattcttcctttctgttagtaatgttaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctgtaagacctcagcgtggctttgtaaccattcttcctttctgttagtaatgttaca 260

                                                                       
Query: 61  agggcaggtgtccagagtgtggatatcctgagaagcccttctgctcaaccctgatcatta 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 agggcaggtgtccagagtgtggatatcctgagaaacccttctgctcaaccctgatcatta 320

                                                                       
Query: 121 aatatgtgttcaacttcgagctagctagctaggtagacggatggatgaatagatacacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 aatatgtgttcaacttcgagctagctagctaggtagacggatggatggatagatacacag 380

                                                                       
Query: 181 acaaacagaatgaccaataaatgatagagtagtacacagatacttagacataatggaagg 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaaacagaatgaccaatgaatgatagagtagtacacagatacttagacataatggaagg 440

                                  
Query: 241 ggtggatggatggatggatgatg 263
           |||||||||||||||||||||||
Sbjct: 441 ggtggatggatggatggatgatg 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)