BAC Information

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BAC

Clone NameMSMg01-168A21
Chromosome7 (Build37)
Map Location 132,481,817 - 132,482,133
singlet/doubletsinglet
Overlap gene4933440M02Rik
Upstream geneEG628779, EG545999, LOC670828
Downstream geneLOC100043014, Jmjd5, Nsmce1, EG244214, Il4ra, Il21r, Gtf3c1, D430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168A21.T7 (MSMg01no168_a21.b1)MSMg01-168A21.TJ (MSMg01no168_a21.g1)
ACCAG365358AG365359
length1,2531,160
length of high quality
(start - end)
---321 (72 - 392)
definitionCHROMAT_FILE: MSMg01no168_a21.b1 PHD_FILE: MSMg01no168_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:01 2005CHROMAT_FILE: MSMg01no168_a21.g1 PHD_FILE: MSMg01no168_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTATCGGCGCTATAGACTACTATAGGGAGAGGATCCGCGGGAATTCTGAT
CTCAGACCGTCGCCTTTGAAGAGGAGACAGGTTGAGGCCTCCGCAGGACC
GTTGGTGACCCCTTAGGAGGCGAGAACCACGAGGGATTGTGTGTGATGTT
CGGATGAAGTAGAGACCATATATTGAGAAGAATAGATGAGCCCCGATGGC
TGGAGTTCTTGTTTATGTTGAAGTATGACTGGAGGAAAACCGGAAAAGTT
CTTCATGTGTAGTATTGATGGTAATAAGTTAGGTGGGTAAGGATGAGCTG
TAGAACAGTAGTATGGGATTTGAATATATTAATCTGAGAGACATGTCTCA
ATATATTTTTTGTTTTGGATAGTATTACTATAAATGATTTATTGAATGTG
ATGACGGTTATGATTAGATATGGAAGAGGTGAAACAAGGGAATTTTTTTT
TTTTTTAAGAGAGAAAGGAGCGAACAGACGACCAATGGGGGAGGGGGAAA
GGGAGGATTTTTTTTTTTTTTTCCCGGGCGGCCCCCCNAAGNNNNNGGNN
NTNAAAAAAAAAAAAAAAAGAGAGGGGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGNNNNNNNNNNNNNNGGGNNGGGGGNGGGGGGGGGGGN
NGGGNGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGG
GGGGGGGGGGNGGNNGGGGGGGGGGGGGGGGGGGGNGGGNGGGGGGGGGG
GGGGGGGGGGGGNGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGTTGTTT
GTGTGTTTTTGTGGTTATGGTTGGTGGGTTTGGAGGTGGTGTGTGNTGGT
GGGTTTTTGGTTGTTTGTTTTTTGTTGTTTGTGGTGGTGGTGTTGTGTTG
TTGTGGGTTTGGTAGTTGGGTAGAGGAGGTGATATTTTTTTTAATATTAG
AATGTGAGAAGGGTGATGATTAATTAAGTTGTATATATTATTGTGAAATG
TATTGAAATAGAGGAATAGGAATAAATTATATAGAGATATTGGAGTGTGA
GTATTTATGGATTTTAATATTGTTATAAGTGGGTTGAGGATAATTAAATG
AAGGATATGAATGATATGATTATTGGTTTATTTGGTGGTGGGGGAGATTA
ATAGAGGAATTATTTGAGTTAGAAATATAATATTGTGATTAGGATATATG
GTAATTAGAATGAAAGAGAATGATAAGTATAGAGTAATTATAGAGATGAG
TTG
NNNGGGTGCTAGGAGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTACATGTGAATGCCAGATGGGATAGTTT
AGCGGCAAATGGGAATGGAGGCTGCTGGAAGAGGCTGCAGCTGCTAGCCT
GAGTAGGAGCGTTGGTTTACATCTTCTTGTGTTAAAGGTGGTCCTGGTGT
GGTTTCCTGCTATTTAAGTGTGGATTAGTTAAATATTTAGACACCTTCTA
GGCCAGGCAAACCCACTGTGGGCTGTGCTGGCTTTGTGTCACTGTCATGG
GAGCGGTTCCTTTGCTGGAGTCTCCAGCAAGTGGTGCCCAAGGGATGCAG
TGCAAGCAGAGTTTGGAGTTTGCGGCCGGTTTCCAGGACTGATTTTTTTG
CTCACGGGATGCAGGTCACGCTGCATCTGGAAGATCATCTCTGTTTTTTT
TCCCCCCCCCCCCCANNAGGNAAAGTGGCCCTAAAAAAGGGGGGGGGNNN
GNNNGNGNGGNNGNNGNNGGNNNNGNNNNNNNNNNNNNNNNNNNNNNNNN
NNGNNNNNNGGGNNNNGGNNNNNGGNGNGGNGGNNNGGGGGGGGGGGGGG
GNGGGGGNNGGGGGGGGGGGNGNGNGGGGGGGGGGGGGGGGGGGGGGGGG
GGGNGGGGNNGGGGGGGGGGGGGGGNGGGNGGGGGGNGGGGGGGGGGGNG
NGGGGNGGNGGGGNGGGGGGNGGGGGGGGGGGGGGGGGGGNNGGGGGGGN
GNGGGGGNNGGGGGGGGGGGNNGGGGGGGGGNGGGGGGGGGGGGGGGGGG
GGGGGGGGGGNNGGGGGGGGGGGGGGGGGGGGNGNGGGGGGGGGGGGGGG
GGGGGGGGNGGGGGGGGGGGGNGGGGGGGGGGGGGGGNGNGGGGGGGGGG
GGGNGGGGGGGGGGGNNGGGGNGNGGGGNGGGNNNGGGGGGGGGGGNNNG
NGGNNGGGNGGGGGGGGGGNGGNNGGGGGGNGGGNNGGGGGGGGGNGGGN
GGNGGGGGNGGGGGGGGGGGGGNGGGGGGGGGGGNGGNGGGNGGGGNGGG
GGGGGGGGGGGGGGNGNGNGGGGGGGGGGGGGNGGNGGGGGGGGGGGGGG
NGGGGGGGGGGGGGGGGGNGGNGGGGGGGGNGGGGGGGGGGGGGGGNGGG
GGGNGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_a21.g1 MSMg01no168_a21.g1 CHROMAT_FILE:
MSMg01no168_a21.g1 PHD_FILE: MSMg01no168_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:01 2005
         (321 letters)



>mm_chr7_132481613_132482333
          Length = 721

 Score =  582 bits (301), Expect = e-171
 Identities = 313/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   atgtgaatgccagatgggatagtttagcggcaaatgggaatggaggctgctggaagaggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atgtgaatgccagatgggatagtttagcggcaaatgggaatggaggctgctggaagaggc 462

                                                                       
Query: 65  tgcagctgctagcctgagtaggagcgttggtttacatcttcttgtgttaaaggtggtcct 124
           |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 461 tgcagctgctagcctgagcaggagcattggtttacaccttcttgtgttaaaggtggtcct 402

                                                                       
Query: 125 ggtgtggtttcctgctatttaagtgtggattagttaaatatttagacaccttctaggcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ggtgtggtttcctgctatttaagtgtggattagttaaatatttagacaccttctaggcca 342

                                                                       
Query: 185 ggcaaacccactgtgggctgtgctggctttgtgtcactgtcatgggagcggttcctttgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ggcaaacccactgtgggctgtgctggctttgtgtcactgtcatgggagcggttcctttgc 282

                                                                       
Query: 245 tggagtctccagcaagtggtgcccaagggatgcagtgcaagcagagtttggagtttgcgg 304
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 281 tggagtctccagcaagtggtgctcaagggatgcagtgcaagcagagtttggagtttgcgg 222

                            
Query: 305 ccggtttccaggactga 321
           |||||||||||||||||
Sbjct: 221 ccggtttccaggactga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)