BAC Information

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BAC

Clone NameMSMg01-168N02
Chromosome7 (Build37)
Map Location 30,715,809 - 30,715,972
singlet/doubletsinglet
Overlap genenone
Upstream geneActn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27
Downstream geneZfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168N02.T7 (MSMg01no168_n02.b1)MSMg01-168N02.TJ (MSMg01no168_n02.g1)
ACCAG365883AG365884
length738737
length of high quality
(start - end)		315 (44 - 358)295 (77 - 371)
definitionCHROMAT_FILE: MSMg01no168_n02.b1 PHD_FILE: MSMg01no168_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:19 2005CHROMAT_FILE: MSMg01no168_n02.g1 PHD_FILE: MSMg01no168_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCTAGCAGCTCTGAGGCCCTCCTTAAAGGAGAGTATCTGTTGGGCC
ATTTGACAATGTGTATTTTAGGCTGTGTCCATTTTGCTTTATCATTTTGT
TTGTTTGCTTGCTTGCTTGCTCCGTTTGAGATCTGGCTGTCTCGGGACTC
ACAATGTTAGACCAAGCTGGCCTTGAACTCATAATCACCTGCTTCTGCCT
CCCAAGTGCTGGGATTAAAGTTTTGTGTCACCATGCCTGGCATTTTGTTT
AATCTTTCATTTGATCAAACTTTATCTTTCAGTTTTTGTATCTTTAAGTT
TGTGGGTTCATTCTGTTGCACACACTCATTTTTTTTTCCTTTTTCAAGAC
AATATTTTATGTAGCCTTGGCTGGTCTCAAATGTCCTATCTAGTAGAGGC
TGACCCTGAACTGCTAAGACTTCTGTCTCCACCTCCCAAAAGCTGAGATT
ACAGGGGTAATTCATGTCCAATTTATGTGATACTAGGATTGAACCCAAGG
TTTTGTAGATGTTAGACATCTATACTGTCAATTGAGGTACATCTTCAGTC
CCACAAATAGACTTTTAAATTTCTCTAATGAAATCCCAAACATTACAGAC
TATTGCCAATGCTCTTGTTTTACCCTCTAGAACAGTGGTTCTTAAACCTT
CCTAATGTTGTGACTTTAACAGTTCCTCATGCTGTGGT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAATGGTGCTGCTTGCATGTCCTC
TGACACATCATTCCGTGGGCTCCCCATGTCCTTTGTGTCACTGGAAATGG
TCATAGTGCCTTTAAAGCACACCACACCAGAGACTTAAGAAAGCTTTCAA
ATGCTGTTCTCTAGGCCATTCTTGTTCCCAGAGTATCAGTGAGGATTCTC
CAATAGGACACTCATCCATATATGTATGCCACATGTAACTTACATGTTAC
ATGTTATATATTAAATGTACGTGCAATATATAATTATTTAACAAGTACAA
AAGGGAGCATTTTATTTTCTATGACTTGAATATATAGTTTCAAGCATTTC
ACGGAGCTGCACATGCAGTTGCGGGGCTGACGAGACTGAAATCAAGGTAG
TCTGTGATTCTGGAAACTCAGTCAGAAGCTAACGCTTGAGGGCCGGCAAG
AGGGCGCAGTGGGTAACGGATGACCGGAGTTCATTCCCTGAACCCACGTT
GTGGAAAGAGAGAACCAATTGCCGAAAACTATCCTCTGATCATGTGTGCT
GTGGCATGCATGTGAGAAAGCTTGTCCTTGGCGATATGGGTACGGGAAGC
TGGAGGGCTGAACAGCTCAAGCGTCACCAAGGACCAGATCCAGGGCTTGG
AGGTGGCCCACTGTCGCGCCCGCTCTCGATCAGCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_n02.g1 MSMg01no168_n02.g1 CHROMAT_FILE:
MSMg01no168_n02.g1 PHD_FILE: MSMg01no168_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:19 2005
         (295 letters)



>mm_chr7_30715478_30716172
          Length = 695

 Score =  279 bits (144), Expect = 2e-79
 Identities = 159/164 (96%)
 Strand = Plus / Minus

                                                                       
Query: 132 tctctaggccattcttgttcccagagtatcagtgaggattctccaataggacactcatcc 191
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 495 tctctaggccattcttgttcccagagtatcagtcaggattctccaataggacactcatcc 436

                                                                       
Query: 192 atatatgtatgccacatgtaacttacatgttacatgttatatattaaatgtacgtgcaat 251
           |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||| 
Sbjct: 435 atatatgtatgctacatgtaacttagatgttacatgttacatattaaatgtacgtgcaaa 376

                                                       
Query: 252 atataattatttaacaagtacaaaagggagcattttattttcta 295
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atataattatttaacaagtacaaaagggagcattttattttcta 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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