BAC Information

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BAC

Clone NameMSMg01-169F17
Chromosome7 (Build37)
Map Location 66,902,793 - 66,903,141
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a, LOC100040985, LOC100041010, LOC100041029, LOC100041051
Downstream genePwcr1, LOC664788, Snrpn, Snurf, EG664849, LOC100041201, LOC100041211, LOC664896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169F17.T7 (MSMg01no169_f17.b1)MSMg01-169F17.TJ (MSMg01no169_f17.g1)
ACCAG366251AG366252
length708735
length of high quality
(start - end)
316 (45 - 360)349 (384 - 732)
definitionCHROMAT_FILE: MSMg01no169_f17.b1 PHD_FILE: MSMg01no169_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:01 2005CHROMAT_FILE: MSMg01no169_f17.g1 PHD_FILE: MSMg01no169_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGGAAGTCACCCTAGAGCCCCCCAAGGAGTCAACGGACCTCTTGT
GACCCTGTTGCCCTGGTTGGGCCTCAGCGTAATCCTATTGAGCATGAATT
TTATGTCATCACCTTTCTTCATGGCATTGGGTTGTCATCATTGACCCAGT
CCTAGACAGAATTCGGCTACCTCTACTTGGATATCACCTAACCTAATCCA
ACCACTTACCTTCCTTTCCAAAACTGGCTCAGAATAGGAATGGTCACATG
GAACTGGAGAGGGATTGCTGGGACGAAATGTCTTCCAGGGAAGCAAGGGC
TCCCTTTCTTGTTACTCCCCAGACTGCCTTGCCTAAGGAGGAAAGGGAAA
GAAGTCAAGACGCTTGTTGTCCCATCTTTAAATAAAGGTCAGAGGAGAGA
GACATTTTTCTGGAGCTCTACTTGTACAACTTCATTGTGCAGAAACTGTC
CTGGGGTTACCTCTTGTATTACTACCAGCCCAGCACACACAAGTCTTCCT
GGCTACCATAGAGAAACATCAGTGGACACACAAAGGAACCCTGGCATTCC
AATAAAGATTTACTGCTTCCTCTCGAAGCAACAGCCACATCACAGGCGAC
CTTAGCCTCACCATTTTGTAGGTATCAACACTCAAGTTGAGCTGCCCAAG
TTCTATGG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACAGAAATCCAATACCCCCTGCC
TCTTGAGTGCTGGGGAGATTGGCCGCACTACCATACCTGCCTTTAAATTG
CTATTTTAGATGATGGCTTTATGCTAATTAAGTTTCTGGGAAATGGAATA
TTATAGTCATCAGTTCATGGAAAGAGCAGTAATAAGGGTAGTATAATTAA
GGAAACATTTTAATACTGCTTGTGTGTTGAATAAATAGTATGAGTAAGGA
ATATAGTTTGATATCATTCATATGACATGTTTTTTTCTTTTGTATAATGT
GAAATTTTATTTTTATGTAGCACACCGCCCCAGTTATAATAAGTTGCAAA
CTTTATACAAATATTTTAAACTATATAAATTCAGTTATTGCACATATTTC
ATCATTATAATCTGTTGTACATCAACAGATAACATTTGGACAGCAATTGC
ATATCGAAATTAGTTTGTCATTATTTTGTTCTTGATATTACTTTCACATT
ATTTATATCTTTTTTCCACTGGTAGTATTTTTCCCAAGAATTGTTCAATG
AAAACTCTTAAAATAATGTATTCCTTAATCTCTTACTCTTTTTCTTAGTA
GTTCCTTTTGTTTTACTCCATAAACTGTATTGAACACTCAGAATAATGAA
AGAAAAGCAACATAAAATACCTTACAGGGAAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_f17.g1 MSMg01no169_f17.g1 CHROMAT_FILE:
MSMg01no169_f17.g1 PHD_FILE: MSMg01no169_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:01 2005
         (349 letters)



>mm_chr7_66902593_66903341
          Length = 749

 Score =  652 bits (337), Expect = 0.0
 Identities = 346/349 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttataataagttgcaaactttatacaaatattttaaactatataaattcagttattgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttataataagttgcaaactttatacaaatattttaaactatataaattcagttattgcac 490

                                                                       
Query: 61  atatttcatcattataatctgttgtacatcaacagataacatttggacagcaattgcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atatttcatcattataatctgttgtacatcaacagataacatttggacagcaattgcata 430

                                                                       
Query: 121 tcgaaattagtttgtcattattttgttcttgatattactttcacattatttatatctttt 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 429 tcgaaattagtttgtcattattttgttattgatattactttcacattatttatatctttt 370

                                                                       
Query: 181 ttccactggtagtatttttcccaagaattgttcaatgaaaactcttaaaataatgtattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttccactggtagtatttttcccaagaattgttcaatgaaaactcttaaaataatgtattc 310

                                                                       
Query: 241 cttaatctcttactctttttcttagtagttccttttgttttactccataaactgtattga 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 309 cttaatctcttactctttttcttagtagttccttttgttttactccataaactgtagtga 250

                                                            
Query: 301 acactcagaataatgaaagaaaagcaacataaaataccttacagggaaa 349
           || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 actctcagaataatgaaagaaaagcaacataaaataccttacagggaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)