BAC Information

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BAC

Clone NameMSMg01-170H24
Chromosome7 (Build37)
Map Location 88,970,164 - 88,970,476
singlet/doubletsinglet
Overlap geneBtbd1
Upstream geneLOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik
Downstream geneTm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170H24.T7 (MSMg01no170_h24.b1)MSMg01-170H24.TJ (MSMg01no170_h24.g1)
ACCAG367043AG367044
length739705
length of high quality
(start - end)
315 (48 - 362)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no170_h24.b1 PHD_FILE: MSMg01no170_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:28 2005CHROMAT_FILE: MSMg01no170_h24.g1 PHD_FILE: MSMg01no170_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACGTTCGTTTCCTTGGCCAAGCTCCAGCTCCTGCTGTCTTTGGA
CTTGGCTCTCACTCCAGCTCTACAGCCCCTCTCCTAGTCACTTGGGAACT
TGTCTGTTGGGGGAAGTTTAATGCTTTACAGCTGTTAAAGGCCATTGTGG
TACCACCTTGCCCCTTTATCTATTCAATGTCCCACCTAACTACTAGTGAC
ATTTTCCTTATTTTAATGCCTGCCTTCCAAGGCCTCTTGTAACTGTATAG
CCTCTATCTAAAAGACAGTAATTACTATACTTAAGGTAGTAATTTTGGGC
TTAACTTTTTGATTAAATACNGCTNNTTCCCCNTCTCGGNAAATTTGTAC
CCTAGCTCATTTAATCTCTCAGCGAGAATTTGATNTCAAGATTACCCTAG
AACAAACCATTCCAACATCTGGTGGTTTTAAACAGTCATTTCATTGTCTT
TAGAGCTGTGTGGGTTGATGGGATCACCCAGTTGTTTGGCATATCTCTAA
GGTTCCAAGACTGGATTTCAGATAACACCCAGGGCTGTGGTCGGTCATAG
GGAGGCTTGGCTCAGATTCTGCATGGTTTTCAGTGGTTTGAGGTCATTTC
AGCGAGCTTGATTTCTTGAACAAAGATAGGAGCTTCCAGTGGTTCTTATA
TTTTTGGCTGTGAGCCTATTCTTTAACACCTGAGCCATN
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCAAACTGGAACAGAAGCTGA
TAAACAGGTTCCTGAAGAAAGAGGAATGCTCATTTAGATATATCTTGCAG
TTGCCTGCTCGAGATCCAGATGGAAATTTCTAGTACACATGAGTCTGGAG
CCTAGATGCAATGGATGACTGGAGATAGCCATCACTGAGTCATCTGCACA
GAGACGAACGCTGAAGCCACTTAGGGACACCGGCATTTAAGGATGCGGTG
TGGCTCTTTCTCTGAGGCTGGATGTGATCATTGCCATCGTGATTCAGAGC
AGCAGTGAGAACATATGACTCNCTCCANNACGNNCACTACCAANATGGAA
GTTAGGGGTGAGGCACATATTTGAGATATATAAGAAGGTAACAATCTCGT
GGAGGAAGGGAAACCTCTTTGGTGATGTGGCTACCCATAGGTTGCCCATG
GTCTGGTCAGTCACTACCCACTCATGCTTTCCTGTAAAGAACCCATGTCA
ATTCATTGGTTCACCAAGCTAGAAGGATGAAACTGCTCCTCTGCCATCGT
TTGACCTTTCTATCTGAGGTGAGTCCAGTAAAGTCACTCAACAAGGGACA
AGCAAAGGAATAGACTCATCCAAGAACCTAGAGAGGCGTGTTGTGTACAA
ATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_h24.b1 MSMg01no170_h24.b1 CHROMAT_FILE:
MSMg01no170_h24.b1 PHD_FILE: MSMg01no170_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:28 2005
         (315 letters)



>mm_chr7_88969962_88970676
          Length = 715

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattccacgttcgtttccttggccaagctccagctcctgctgtctttggacttggctct 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattccacgttcgtttccttggccaagctccagctcctgctgtctttggacttggctct 456

                                                                       
Query: 63  cactccagctctacagcccctctcctagtcacttgggaacttgtctgttgggggaagttt 122
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cactccagctctacagtccctctcctagtcacttgggaacttgtctgttgggggaagttt 396

                                                                       
Query: 123 aatgctttacagctgttaaaggccattgtggtaccaccttgcccctttatctattcaatg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aatgctttacagctgttaaaggccattgtggtaccaccttgcccctttatctattcaatg 336

                                                                       
Query: 183 tcccacctaactactagtgacattttccttattttaatgcctgccttccaaggcctcttg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tcccacctaactactagtgacattttccttattttaatgcctgccttccaaggcctcttg 276

                                                                       
Query: 243 taactgtatagcctctatctaaaagacagtaattactatacttaaggtagtaattttggg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 taactgtatagcctctatctaaaagacagtaattactatacttaaggtagtaattttggg 216

                        
Query: 303 cttaactttttga 315
           ||| |||||||||
Sbjct: 215 ctttactttttga 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)