BAC Information

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BAC

Clone NameMSMg01-170J19
Chromosome7 (Build37)
Map Location 61,572,290 - 61,572,594
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668789
Downstream geneMrps33p, LOC622146, Luzp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170J19.T7 (MSMg01no170_j19.b1)MSMg01-170J19.TJ (MSMg01no170_j19.g1)
ACCAG367120AG367121
length747748
length of high quality
(start - end)
312 (43 - 354)292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no170_j19.b1 PHD_FILE: MSMg01no170_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:37 2005CHROMAT_FILE: MSMg01no170_j19.g1 PHD_FILE: MSMg01no170_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAATCTTTAGAACCTCATCTTGAGCAAGGTTTTGGGTGGAGTTTACTG
TGTAGTACTGAGTTTCAGAACACATGAGGAACAGGTATTATCTAATATTA
AAAATAACTCATTTCATGTACTGCAATCTAACTTTGACTTGGTGACAATA
TGTATGCAAAATGACAGGAGGTAATTTTATATTAGAACTATTTTGATGCA
ATATTATGTTGATCATATATATCAAATCAAGAAAGACTACAGACGAAGGT
TTGGACTTATTTCCATTACACACGTGTTGTGTTTTATTAATTTGAGTCTG
GTTGACATANTTTCCCCCACACCCTAAGAATTTCTTGATAGTTGTTTTCA
AAGATGGCATAAGTGTAAACATAAATGTTACATGCTTACTCTTAACTACA
TGATACATGTACATAAAGTTTAAAATTTACAAAATTTGCATTTACAGAAT
TAATATGTTATGTACTTCTATTTAACTTTAATAGATGCATATTTATAATC
TTATTTCCCTTATTCATATACATGAGGATATATACACATTATTATTCATT
TTACAGACACACTGTGTAATATCCAGCAAGTTGCACATTTCCTTTTATCT
AAGAACATTCGCATAAGACCCTAACATAATGCCCCCTAAATTAGTTTCAA
AATAACCATCTCCCACTAGCTGCCATTCTGGTGTCACCGACGTACCG
CGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGGTTTGGATTGTTTTAGAAATGTAGC
TTGATTTAAATACTTTTTGGAAGCAGGGATAGTTGATAGAAAATTTACAG
TTAGAATTAAAAACAGAATGTGCCCTTCCCCATACGATGGCAAGAGCTGC
ATGAGTTAGAGAAAGGAGCACAGTGAGAATTCATGTACTGCAAGCACATA
ACTGTAGTAACAAGACAAATAGGCTCAGGCCAAGGTAATAATCAAAGAGA
GCATTCAGTCTAGTTTGGGCCTAAGTTCCTTGGTTTTGTGATCTAAGGAT
GTGATAACAGGTNNGGTTANCTGCTGTTGCTGNTCCTGTTATTTGTTTTG
TTTTGTTTTGTGTGTTTGTGCGTATGAGAAAAAAAAAAAAATTGGGGGGG
GGGGGGGGTGTTTTTTTTNTTTTTTTTTTTTTTTTTATTTTGTTTATATA
AAAAATTTGTTAGTGTGTTTTGTTAATATAGGTTTATTATTATATTTTTT
ATTTTTTTATTATGAGTATAGTGTTTTGGTAATATTTTTTTTTGAATTTA
AAAATAATATATTGATTGGATTATTTTTTATTTAATTTTTTTTTTTGTTT
TTATTTTTTTTATTTGTTTTTTATTATTTTATAAAATGTTTTCTGTTTTT
ATTACCTTCCCCTTTCTTCCATCATATCTCCCTTTTAATATTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_j19.b1 MSMg01no170_j19.b1 CHROMAT_FILE:
MSMg01no170_j19.b1 PHD_FILE: MSMg01no170_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:37 2005
         (312 letters)



>mm_chr7_61572086_61572797
          Length = 712

 Score =  536 bits (277), Expect = e-157
 Identities = 298/305 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaatctttagaacctcatcttgagcaaggttttgggtggagtttactgtgtagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 509 gaattccaatctttagaacctcatcttgagcaaggttttgggtggagtttattgtgtact 450

                                                                       
Query: 65  actgagtttcagaacacatgaggaacaggtattatctaatattaaaaataactcatttca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 actgagtttcagaacacatgaggaacaggtattatctaatattaaaaataactcatttca 390

                                                                       
Query: 125 tgtactgcaatctaactttgacttggtgacaatatgtatgcaaaatgacaggaggtaatt 184
           || |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 389 tgcactgcaatctaactttgacttggtgacagtatgtatgcaaaatgacgggaggtaatt 330

                                                                       
Query: 185 ttatattagaactattttgatgcaatattatgttgatcatatatatcaaatcaagaaaga 244
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 329 ttatattagaactattttgatgcaatattatgttgatcgtatatatcaaatcaagaaaga 270

                                                                       
Query: 245 ctacagacgaaggtttggacttatttccattacacacgtgttgtgttttattaatttgag 304
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctacagacaaaggtttggacttatttccattacacacgtgttgtgttttattaatttgag 210

                
Query: 305 tctgg 309
           |||||
Sbjct: 209 tctgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)