BAC Information

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BAC

Clone NameMSMg01-170O07
Chromosome7 (Build37)
Map Location 76,039,450 - 76,039,764
singlet/doubletsinglet
Overlap genenone
Upstream geneIgf1r, C330024D12Rik, EG434197, LOC100041800, EG384639, Arrdc4
Downstream geneLOC384741, EG665410
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170O07.T7 (MSMg01no170_o07.b1)MSMg01-170O07.TJ (MSMg01no170_o07.g1)
ACCAG367310AG367311
length722723
length of high quality
(start - end)
320 (46 - 365)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no170_o07.b1 PHD_FILE: MSMg01no170_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:58 2005CHROMAT_FILE: MSMg01no170_o07.g1 PHD_FILE: MSMg01no170_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAATCAAAATAGGGTCAGCATTTAGGTAGTTAAGCAGCAACGTC
AACAGGGTTGGAAAATGTGAAAATATAATAATTTGGAGAGCTTTAAATTG
ATACAATGGAGATTATATACCTCTCACTAGATAGCATCCGAAGAGGAAGA
AGTCACTTTCAAGCAAAGAGCCCTCATGCTTTTTGCAGCCATCTGTGTCA
CCAATGCCTTCTTTGAACTTCAAAGCAATAGCCATTAGGATCTAGTACAA
TAGGAAGAAAAAAAACTACATTCTGCATTTATCTCAAGGCAAAGGATCAA
TCAGGAGAAGGCTTTTTTTTTGTGCCCCGCCCCACTCACAGAATACTGTT
GGCAAAAGGGGCTGAATGTAGACACCAGCATCTGATCCTCTACACTTGGC
AACCACTAGAGACTAAATCAATCCTTAAGGCAAAGCCTAAACGTAGGCTG
AACACTGACAACAATGTTCAATGCTAACATGGACAGGAGTACTCCATGAG
GTCTTAACTGTGCACATAGAACGACAGGCAACTAAGGAAGGCCGAGAGGG
GGAGAACTGGATCTCCTCTGGAAGGAGAACACCAATTGGTTATCTAATAC
CACGTGATCCCTGAACACTTATATACAATAACCTTATACCGATAGAGGAT
GCTATACTTATGCACTTGGGAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATCTTCTTGTGGGGGAAGGGAATAA
GTGCGAAAAGCTATAAAGGCACACACACACACACACACACACACACACAC
ACACACACACACACACACACACTCACATGGACCGTGATGAAACTCATTAC
TTTGTATGCTGTACTGGTTAATTTTGACACAAACTAGAGACATCTTGAAA
TCTGTGCCTCTATAAGATTTGCCTGTGAGAAATCAATGATGGAATTTTCT
TGATTAATAATTAATATAGGATGTTTTAATTCACTGTGAGTGATGGAATC
CCCAGACTGTTTGTTTTATATCGCCCTAACAANNCCAGTGAGCAAGTCAG
GTAGAGCTAACCAGGAAGCACCATTCCCACATAAACTCGGCTTCAGTTAC
TGCCTCCAGCTTCATACCTTAAACTTCTACCCTGGGTTCTTGCCATGATG
GATCGTAGCTAATAACCCAGGTAGACCCTTTTGTCTCCCCAGTACCTTCC
AGCCATGGCGTGTCCCACATCACCTGGAAACAAACTAGAACAATTCCTGC
TACTGATTTGTTGCTAATCTGTGGTTCCGAACCCATGACAATGCCCCCTA
TTGAAACCTCAGACTTCGCCATGTATATCTTTTAAATTTGTCTAGTGTTT
TATTTCCCCACATTCTGCCCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_o07.b1 MSMg01no170_o07.b1 CHROMAT_FILE:
MSMg01no170_o07.b1 PHD_FILE: MSMg01no170_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:58 2005
         (320 letters)



>mm_chr7_76039246_76039966
          Length = 721

 Score =  601 bits (311), Expect = e-176
 Identities = 314/315 (99%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagaatcaaaatagggtcagcatttaggtagttaagcagcaacgtcaacagggtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcagaatcaaaatagggtcagcatttaggtagttaagcagcaacgtcaacagggtt 460

                                                                       
Query: 65  ggaaaatgtgaaaatataataatttggagagctttaaattgatacaatggagattatata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggaaaatgtgaaaatataataatttggagagctttaaattgatacaatggagattatata 400

                                                                       
Query: 125 cctctcactagatagcatccgaagaggaagaagtcactttcaagcaaagagccctcatgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cctctcactagatagcatccgaagaggaagaagtcactttcaagcaaagagccctcatgc 340

                                                                       
Query: 185 tttttgcagccatctgtgtcaccaatgccttctttgaacttcaaagcaatagccattagg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tttttgcagccatctgtgtcaccaatgccttctttgaacttcaaagcaatagccattagg 280

                                                                       
Query: 245 atctagtacaataggaag-aaaaaaaactacattctgcatttatctcaaggcaaaggatc 303
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atctagtacaataggaagaaaaaaaaactacattctgcatttatctcaaggcaaaggatc 220

                          
Query: 304 aatcaggagaaggct 318
           |||||||||||||||
Sbjct: 219 aatcaggagaaggct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 721
Length adjustment: 9
Effective length of query: 311
Effective length of database: 712
Effective search space:   221432
Effective search space used:   221432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)