BAC Information

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BAC

Clone NameMSMg01-173L08
Chromosome7 (Build37)
Map Location 128,596,226 - 128,596,511
singlet/doubletsinglet
Overlap geneHs3st2
Upstream geneAbca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556
Downstream geneUsp31, Scnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173L08.T7 (MSMg01no173_l08.b1)MSMg01-173L08.TJ (MSMg01no173_l08.g1)
ACCAG369234AG369235
length708658
length of high quality
(start - end)
314 (36 - 349)292 (1 - 292)
definitionCHROMAT_FILE: MSMg01no173_l08.b1 PHD_FILE: MSMg01no173_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:26 2005CHROMAT_FILE: MSMg01no173_l08.g1 PHD_FILE: MSMg01no173_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATAA
CAATTTTCCCAATCAGGAATTTCTACAAATGCTCACTCCTCATGGTTACG
TGTATGAAACAACTCCTCTCCCTGAGGTTCAGGGGTCATTGCAGAAGAGA
GGGTGGGAAGATTATAAGAGATAGAGGATCTGGGAGTTTGCTGTGAGATT
GTGTCTTCTAGTAATATCAGGAGGGACACCCATAATCTTACCATCATGAC
TGCCCAAAGGTGAGCTGAACAGGGCAATAGACATGCCAGAGTGGATGGGA
AAGTCTGGTTCGCTATCCAAGATACAGAACCACGGGAAACTAGGAAATGT
TGTGTTTGGCCCCCCCCCCCCTCAGAGGAGAGCACACCAACCGGTTTTCT
GGTTCGCCAGCCCTGAAAAACATGCATGTGAGTAACATTATAGAGACTGA
GCAGGTAATAATGAGGACTCTCTCTCTCACACACCCACACTTACATTTTC
ACTCACCCACTTATTTCTTAACAATGCATAAAGAGGCCATGAATTTGAAA
GTGAGCAAGGTCGGATACATGGTAGGTTTTGTACGCTCGATAGTGTAGTG
ACAAACGACCCCCTTATACTCTTTTCCCCTCCTCACCACCCCTTATACAT
TTTTTCCCTGCTCCTTCCCCTCTCTTTCCTACCCCTATTTGTCCTTTGTT
ATTTCACA
ATCCGCGGAATTCTCTGCCTTGAAAACCTCTACTCTTAATCTTGATGGAA
AACCCCACATCTGCAGCTCATGATTTCCACTCAGGGAAAGCTGCAACCAT
TGCTCTCCAGCAGGACTCGGGAACAAACAAGGCCACCGACCAGAAGCATA
TTGCTGAGGGTGGAGGCTGGGGATTGAAGGTGGTCTGGTCCGAGAGTGTC
TGCCAGGGAAGACGGCAGCTGAACTGAGGCCCGGTGGGCAGGGAGCACTG
GATAGATATAGAAGGGAGGAGGCAGATAAGTACAGAGCTGCATATTCCTG
ACTTCCCANTCGAACCCCCCATCAGACCTCTTTTTAACTACAGGCCATGC
CACCCTCCTTTAGAAAAATGTCTTGAAGCCATGACACCCACATGTGCATG
TCTTGCTAGATTCCCCCAGTTACCACCATGGCTTACTCCTCGGTTTTAGG
AAGTTTGTGCTTCAGCGTCTACCTAACCATCCTACTTACTACTGCAGCTG
CCTTCCCCTCTCTGAGGCACACAGCAGAACCCCTCTTCACTCTAATTTTC
CTTGGCTCCCATTGTTGCAGATATTTGCTTTACCTGTATCATTTGTGGTC
TCGAGGGATTTCAGTCCTTCCCCCCCCTTCCCAGATTATTTTCCTTTTTG
ATCACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_l08.g1 MSMg01no173_l08.g1 CHROMAT_FILE:
MSMg01no173_l08.g1 PHD_FILE: MSMg01no173_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:26 2005
         (292 letters)



>mm_chr7_128596020_128596711
          Length = 692

 Score =  499 bits (258), Expect = e-146
 Identities = 279/286 (97%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaattctctgccttgaaaacctctactcttaatcttgatggaaaaccccacatctgcag 66
           ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 207 ggaattctctgccttgaaaacctctactcttaatcttaatggaaaatcccacatctgcag 266

                                                                       
Query: 67  ctcatgatttccactcagggaaagctgcaaccattgctctccagcaggactcgggaacaa 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ctcatgatttccactcagggaaagctgcaaccattgctctccagcaggactcgggaacaa 326

                                                                       
Query: 127 acaaggccaccgaccagaagcatattgctgagggtggaggctggggattgaaggtggtct 186
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 327 acaaggccaccgaccagaagcatattgctgagggtggaggttggggattgaaggtggtct 386

                                                                       
Query: 187 ggtccgagagtgtctgccagggaagacggcagctgaactgaggcccggtgggcagggagc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggtccgagagtgtctgccagggaagacggcagctgaactgaggcccggtgggcagggagc 446

                                                         
Query: 247 actggatagatatagaagggaggaggcagataagtacagagctgca 292
           ||||| |||||| |||||||||||||||||  ||||||||||||||
Sbjct: 447 actgggtagatagagaagggaggaggcagaggagtacagagctgca 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)