Query= MSMg01no176_c04.b1 MSMg01no176_c04.b1 CHROMAT_FILE:
MSMg01no176_c04.b1 PHD_FILE: MSMg01no176_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:31 2005
(701 letters)
>mm_chr7_105494123_105495223
Length = 1101
Score = 826 bits (427), Expect = 0.0
Identities = 507/539 (94%), Gaps = 16/539 (2%)
Strand = Plus / Minus
Query: 178 atgaaatatcttttattttgaaccaccctccaccttggcaaaattcataagcttccattt 237
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1101 atgaaatatcttttattttgaaccaccctccaccttggcaaaattcataagcctccattt 1042
Query: 238 ttttaactctccatcctctttctccccctccttctcc---tccttctcttcctcttcctc 294
|||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 1041 tttt-actctccatcctctttctccccctccttctccttttccttttcttcctcctcctc 983
Query: 295 ct--tc-tcct--t--t--tccttttcttcctcctcctccccctccccctcctcttcctc 345
|| || |||| | | |||| || |||||||||||| ||||| ||||||| |||||
Sbjct: 982 ctcctcttcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctc 923
Query: 346 ttcctcctcttc---cttctcattttttcttgggactgccagctcccaggagagatacca 402
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 922 ctcctcctcttccttcttctcattttttcttgggactgccagctcccaggggagatacca 863
Query: 403 tgaggagcagtaccatacttagggacttccctgagtatggcttggggctggagctgaccc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 tgaggagcagtaccatacttagggacttccctgagtatggcttggggctggagctgaccc 803
Query: 463 attagacttgagagaagtgggaactcctgtccctttcctttctgaacacctttaccttgt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 attagacttgagagaagtgggaactcctgtccctttcctttctgaacacctttaccttgt 743
Query: 523 gcctgaaaaccaccattgctctttgacttaagtgaggaccgctgtctgaggctcctctgt 582
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 742 gcctgaaaaccaccattgctctttgacttaagtgaggacagctgtctgaggctcctctgt 683
Query: 583 gatgggcaagggctcagggtgtctgggtgagcctacagggaggacatgcgctgtttcatg 642
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 682 gatgggcaagggctcaggatgtctgggtgagcctacagggaggacatgcactgtttcatg 623
Query: 643 gggccaaagaggcacctgccacactgcccagggctgtcacgtaggaatgctttctaagg 701
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 622 gggccaaagaggcacctgccacactgccaagggctgtcacctaggaatgctttctaagg 564
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_c04.g1 MSMg01no176_c04.g1 CHROMAT_FILE:
MSMg01no176_c04.g1 PHD_FILE: MSMg01no176_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:31 2005
(687 letters)
>mm_chr7_105339353_105340439
Length = 1087
Score = 1236 bits (639), Expect = 0.0
Identities = 678/693 (97%), Gaps = 6/693 (0%)
Strand = Plus / Plus
Query: 1 tgggcaagcctgggcctcgagagatcatgtcttagataaatacatattttaaaaagaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggcaagcctgggcctcgagagatcatgtcttagataaatacatattttaaaaagaggg 260
Query: 61 tgttaatttgatttctctgtaaacttccgaggcttaacaaaattaaaattgtgtatgtac 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttaatttgatttcgctgtaaacttccgaggcttaacaaaattaaaattgtgtatgtac 320
Query: 121 ctgagtgagtaatgaacatcacatgaccttagtgatcccccaaaccggaggacagcatta 180
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 321 ctgagtgagtaatgaacatcacataaccttagtgatcccccaaaccagaggacagcatta 380
Query: 181 ggtccaagaacaggaattctagatg-tttttaagccaccacgtaggttctgggaactgaa 239
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 381 gatccaagaacaggaattctagatggtttttaagccaccatgtaggttctgggaactgaa 440
Query: 240 ccctggtcttctagctgtataacctcttaagcatggaaccaccattcctgtcccttctaa 299
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctggtcttatagctgtataacctcttaagcatggaaccaccattcctgtcccttctaa 500
Query: 300 gacacaacaacccccc----ccccatcctcacacattatttgtgtataactgctgtttgg 355
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacacaacaacccccctcccccccatcctcacacattatttgtgtataactgctgtttgg 560
Query: 356 atgaatgaactcaagtgtctttaactgctgagccatctttccagccctatcttctgaaac 415
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 atgaatgaactcaagtgtctttaactgctgagccatctttccagccctaacttctgaaac 620
Query: 416 tttaaaaataattttgggggttatggtggagctcatttataatcccaggaattgggagcc 475
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 tttaaaaataattttgggggttatggtggagctcatttataaccccaggaattgggagcc 680
Query: 476 agtggcagaaaaaaaaa-tcagtattccaaagcctttctcaactcgacatgaactccagg 534
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 agtggcagaaaaaaaaaatcagtattccaaagcctttctcaactcaacatgaactccagg 740
Query: 535 gaagcctaggcttgtctttttcctctccttttgaacagggtcttgtagtagttttagccc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaagcctaggcttgtctttttcctctccttttgaacagggtcttgtagtagttttagccc 800
Query: 595 aggcttagaactcggggccctgcacctcagcctcgggagggctggggttttggcatgtat 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aggcttagaactcggggccctgcacctcagcctcgggagggctggggttttggcatgtat 860
Query: 655 caccacacccttctaggggatatcatacttacg 687
|||||||||||||||||||||||||||||||||
Sbjct: 861 caccacacccttctaggggatatcatacttacg 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
