BAC Information

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BAC

Clone NameMSMg01-178K15
Chromosome7 (Build37)
Map Location 89,586,516 - 89,586,796
singlet/doubletsinglet
Overlap geneAdamtsl3
Upstream geneCpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3
Downstream gene1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178K15.T7 (MSMg01no178_k15.b1)MSMg01-178K15.TJ (MSMg01no178_k15.g1)
ACCAG372680AG372681
length803722
length of high quality
(start - end)
202 (72 - 273)282 (75 - 356)
definitionCHROMAT_FILE: MSMg01no178_k15.b1 PHD_FILE: MSMg01no178_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:31 2005CHROMAT_FILE: MSMg01no178_k15.g1 PHD_FILE: MSMg01no178_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATATXXXXXXXXXXXXXXXXXXXXXXXXXNANATTCGAGAGGATCCGCG
GAATTCCTAACATTGACAGAATGTGTGTCTGTTTCTTTTTGCCAGCATTT
GAGACTCTTTCCTCCCGTTGAGCTGCTTTGTCTAGGTTCAAAGTGAGGGC
TGTCACCTCATCTGACTATATCGTGATTTGTCATGTTTGGTGTTGTCTCC
TGGAGGCCTGATCCTTTCTATAGGGAAACTGAGGGAGAGTGCATCTGGGG
GGAGGGAGAGGCCTGTGTGGGGTGCCGTCCCCCGTTTTTTTCCGGTCGGC
TTGACTGTCGCGAGCTTTTTTTTTTTACCTTCTGTTTTCAATCCAACGAT
ATACTGTTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCTCGTTTTTTTTT
TTTTTTACTTTTTCTTTTTTTTCCCCCCCCTTTTAAAAAAAAAAAAATTC
TTTTATTCTATTTCTTCCGTCCATATTCAACACCTTTTCCCTATTAATCC
TACTCCTATATTCCCCCCAATTTACACTATTCCCACTCTCCTTCCTCCCT
TATCTCCCTCCTTATTTTCCCTCCTCCTTCCGTGCCCCTTTTTCTCCAAT
TTTGACCACCATTTTCTTATTCCCTTTTTTGATGATATATCAATAAAACT
ACCCCTTTTTATCCCCCCTTTCCTTCCTCTTCTATTTTTTTCCTATCACT
ACTCCCGTATTTTCCACCCCTGTTTTTGAATTTATCTTTCTATCCCTACA
ATTATATCCTAAACCTTTCTGTGTTTCTCACCCCCACTTTTCCCCCCCCC
CCC
CGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATTGTGTTCTTCTGAAATGTTCTGT
GAAACTTATAAACCTCCAGATCCCGTGGTCTCCCTGAATTCATCTGACTT
AAACAGGTATATGAGCTTACAAAATATCCTAAACTTTGCATACATATGTG
TGTATATGATATGTGCATACATACATCTACACAGGATTGTGTATTACATA
TGTGTATTGAATGTAAGGTCAGCTGAGATAACAATTTGCTGTCTGGTGTC
GACAATAGATAAATGGATGATTTTATATTTTTGTCCCTCCATCTTGGCTC
TAGGCCTTTGAATANCTGCCTAACCATCCCCAAACAAGGGACAGTAATGA
CATTCTCTTCCTGACCCACCAAAAAGAAAAATGAGAGAAGGGTAGGCGGC
TTTTATTTATTTACTTATTTTTATCTATTTTTTACCCTTTCCATAAATCC
CACTGGATTCATGCTCCATTTCCCTCCCTTTCCTCTTATTCCCCCTCATC
ACTTTTCCCCCCTCTTTATACCCCCTTCCCTTAACACTTTTACTTCACCC
TCGCCATCCCCTTTAAACACCTACTATCTAACATTTTCTACCTTTCTTTT
TACTCCTCCTTTCACATATCACCACCATTAACTCCTTTCTCCCCCCTTTT
GTTTTGCCCTCCCCTCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_k15.g1 MSMg01no178_k15.g1 CHROMAT_FILE:
MSMg01no178_k15.g1 PHD_FILE: MSMg01no178_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:31 2005
         (282 letters)



>mm_chr7_89586316_89586996
          Length = 681

 Score =  453 bits (234), Expect = e-132
 Identities = 270/288 (93%), Gaps = 13/288 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattgtgttcttctgaaatgttctgtgaaacttataaacctccagatccc--gtggtctc 58
           ||||||||| |||||||||||||||||||||||||||||||||||||     ||||||||
Sbjct: 201 cattgtgtttttctgaaatgttctgtgaaacttataaacctccagat---ttgtggtctc 257

                                                                       
Query: 59  cctgaattcatctgacttaaacaggtatatgagcttacaaaatatcctaaactttgcata 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 258 cctgaattcatctgacttaaacaggtatatgagcttacaaaatatcctaaactttgtata 317

                                                                       
Query: 119 catatgtgtgtatatgatatgtgcatacatacatctacacaggattgtgtattacatatg 178
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 catatgtgtatatatgatatgtgcatacatacatctacacaggattgtgtattacatatg 377

                                                                       
Query: 179 tgtattgaatgtaaggtcagctgagataacaatttgctgtctggtgtcgacaatagataa 238
           ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 378 tgtattgtatgtaaggtcagctgagataacaacttgctgtctggtgtcgacaatagataa 437

                                                           
Query: 239 atggatgatttt----atatttttgtccctccatcttggctctaggcc 282
           ||||||||        ||||||||||||||||||||||||||||||||
Sbjct: 438 atggatga----cggaatatttttgtccctccatcttggctctaggcc 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 681
Length adjustment: 9
Effective length of query: 273
Effective length of database: 672
Effective search space:   183456
Effective search space used:   183456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)