Query= MSMg01no179_l04.b1 MSMg01no179_l04.b1 CHROMAT_FILE:
MSMg01no179_l04.b1 PHD_FILE: MSMg01no179_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:46 2005
(644 letters)
>mm_chr7_77485506_77486550
Length = 1045
Score = 1208 bits (625), Expect = 0.0
Identities = 637/641 (99%), Gaps = 1/641 (0%)
Strand = Plus / Plus
Query: 5 gaattcactggctttagcattaaggagtggggggaaaatctttacatcctctctaggtgt 64
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattcactggctttagcattaaggagtgggggaaaaatctttacatcctctctaggtgt 264
Query: 65 aagatgctgtaagaattcaggagggctgctggcactccatgcctctctctccctgctgca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagatgctgtaagaattcaggagggctgctggcactccatgcctctctctccctgctgca 324
Query: 125 cctggaaagccagctctgaggagaagaaatagtcttttccccacagtctgtcattctgct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctggaaagccagctctgaggagaagaaatagtcttttccccacagtctgtcattctgct 384
Query: 185 accacaaataacccaatgtgagaagtaccccaggcttgagaatattgatagatgatagta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accacaaataacccaatgtgagaagtaccccaggcttgagaatattgatagatgatagta 444
Query: 245 gtgatattcacaatcgatcctttaataggcagacgtcataaatcatgttcaatgccctga 304
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcgatattcacaatcgatcctttaataggcagacgtcataaatcatgttcaatgccctga 504
Query: 305 cagaatggtacttcacttaataatataattaagattaaaactccagagctactgaggtag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagaatggtacttcacttaataatataattaagattaaaactccagagctactgaggtag 564
Query: 365 cagctattgacagctttaaaaaa-tgcattctagataccattgtgggatacaataggact 423
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagctattgatagctttaaaaaaatgcattctagataccattgtgggatacaataggact 624
Query: 424 ttgggaaaatacaacctctttcccaaaagatagagtcttaccagtgttccatctctgagt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgggaaaatacaacctctttcccaaaagatagagtcttaccagtgttccatctctgagt 684
Query: 484 tccttgggccttggttaccaaccccacccccaacacatctttccctcagtcatacagact 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccttgggccttggttaccaaccccacccccaacacatctttccctcagtcatacagact 744
Query: 544 aaggatagaccttataaccttgaatgtggagtttaaaaaattctcaagagacttaagaaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaggatagaccttataaccttgaatgtggagtttaaaaaattctcaagagacttaagaaa 804
Query: 604 aatggttcattgttattttcaatacacttaaatcccttaat 644
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aatggttcattgttattttcaatacacttaaatcccttaat 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1045
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1035
Effective search space: 656190
Effective search space used: 656190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no179_l04.g1 MSMg01no179_l04.g1 CHROMAT_FILE:
MSMg01no179_l04.g1 PHD_FILE: MSMg01no179_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:46 2005
(613 letters)
>mm_chr7_77634020_77635035
Length = 1016
Score = 1118 bits (578), Expect = 0.0
Identities = 606/618 (98%), Gaps = 7/618 (1%)
Strand = Plus / Minus
Query: 1 tttctacattgtctttctgtcttcccatccattgcgggaagagttgcccttctggtctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 tttctacattgtctttctgtcttcccatccattgcgggaagagttgcccttctggtctct 924
Query: 61 gtgcttctcgtaggaagacagctgttgattccactgaggaatgtgaggtccccttgctgc 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 923 gtgcttctcgtaggaagacagctgttgatttcactgaggaatgtgaggtccccttgctgc 864
Query: 121 ttccaacattccttcttttcctttgtctttgagtagtttgactatgactgagtgattctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ttccaacattccttcttttcctttgtctttgagtagtttgactatgactgagtgattctc 804
Query: 181 ttcttccaaaagttgttttagctaa---cttctggcagtgtaggctttgaactcctgaag 237
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 803 ttcttccaaaagttgttttagctaacttcttctggcagtgtaggctttgaactcctgaag 744
Query: 238 acaggtatctgatatccaaaataaagataataatgcttatcatttagagttataaaagga 297
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 743 acaggtatctgatatccaaaataaaaataataatgcttaccatttagagttataaaagga 684
Query: 298 gatacaaaaattacattttctggctggtagaaaacatgtcacatgtttttttcttaaagc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gatacaaaaattacattttctggctggtagaaaacatgtcacatgtttttttcttaaagc 624
Query: 358 atggacccctttggggaaatatgttggaagaggacactgcttgctttgccatttctttgt 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 623 atggacccctttggggaaatatgttggaagaggacactgcttgctttgccatttctgtgt 564
Query: 418 ttatgcacaggcagagcctctgtgtgcttttgc--ctcatctcaaatatggcctttctaa 475
|||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||
Sbjct: 563 ttatgcacaggcagagcctctgtgtgcttt--cagctcatctcaaatatggccttcctaa 506
Query: 476 agaggcattctttcacacccccaaagaaactctccactagccattctctttcccattgca 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agaggcattctttcacacccccaaagaaactctccactagccattctctttcccattgca 446
Query: 536 gattgagtatcacctgaccacatgcctggaaccagtaatgtttcagatttacggtttgct 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gattgagtatcacctgaccacatgcctggaaccagtaatgtttcagatttacggtttgct 386
Query: 596 tccttttcagaaaattgg 613
||||||||||||||||||
Sbjct: 385 tccttttcagaaaattgg 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1016
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1006
Effective search space: 606618
Effective search space used: 606618
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
