BAC Information

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BAC

Clone NameMSMg01-180J01
Chromosome7 (Build37)
Map Location 35,072,801 - 35,072,962
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860, LOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734
Downstream geneLsm14a, LOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180J01.T7 (MSMg01no180_j01.b1)MSMg01-180J01.TJ (MSMg01no180_j01.g1)
ACCAG374007AG374008
length725835
length of high quality
(start - end)
239 (119 - 357)163 (68 - 230)
definitionCHROMAT_FILE: MSMg01no180_j01.b1 PHD_FILE: MSMg01no180_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:50 2005CHROMAT_FILE: MSMg01no180_j01.g1 PHD_FILE: MSMg01no180_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
AGCCAGCCTAGTGTAGTGTAGTGAGACCCTGTCTCAAAAATTTGTAATTG
TATAACATGAATATCTCGGAGTGTAGCTCAGTGGCAGAGCAATAACGTAG
AATCCACCAGTGAGGGGTAGGGTCTGGGGTCAGGAGTAGATCACTTGCCT
AGCATGCAAAGGGCCCTAAGTTCATACCCAGCACTGAAAAAAATAAATAA
ATAAATAAATAAATAAATAAATAAATAAATGGAAGGAAGGAAGGAAGGAA
GAAAATGGGGGAGGGAAGAACAAAGGAAGGAAAAGAAAAAAAGGACTAGA
GAGATGTTTCATTGCCTACCACCACTTCCTGGTTGTATTCGTCAGGGCTC
TCGGGAGGACCACAACTGATAGAATGAATATAGACAGAGAGAATGGTAGA
CTGATATATAGCAATATGTACGTATCATACAGCCAGAGAAAGGGGATTTA
TTAGAGTGGTTTATAGGCTGAGGTCCAGCTAGTCCAACAGTGGTTGTCTG
CCAACAGAAAATTGTTCAGTCCATGAGGCTGGATGTCTCATCTGGGCTTC
ACTATATGCTAGAATCCTGAAGAAGTCAGCTCTGATGCCAGTGAAGGGAT
GGACCTGTCAGTTAGACAGAAGGCCCGCAGGCCGAGTCACTTTCCTTCTT
CCGGTCCCTTATATAGGCTGCCAGN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATGAGTCAGAGACCAGCCCAGGTTAAGTGTCA
GAGCAGCTTGGGCTAAAAGACAGCCCTATCTCAACAATCAAAAATAAACA
GATACAAATTCTGGTCCTGAGACATATGAAGTGGTTTATGCCTGTAATCC
CAGCACTTGGGAAGCTGGGGCAGAAAGAAATGGGCAGAAAGTTTTTGCAA
GGTTAAGNCTCTATGTATAGGTAACATTTCTTGGAGGGGGGGGNNCNNCC
CCCCTCCTTTTCCCCCGCCTCTGTCCCTCTTTTTTTGTTTCCCCCTTTCC
CTTTTCCTTTCCGTTTTTCCCTGCCCCCCCCCGTACCCCCCTATTTCCCC
GCCTTGCTCGTCTTTGTGAGACAAACACCACAATCACCCAAACCCCACCC
TACTATTCTCTCCCCTATCTCGTCATTGCCCCTCTTTCCCCCATCCCTCC
TCCACTATTTATTGCTCTCTCTCACCGTCTCCCCCCTTTAACCCCACACC
ATCTCACTATTATAACTATATTTCTTAGTCAATGTATCTATCTAAAAATT
TCGTTGTATACATCCAACCCACTAACCTACTTTTGAATTTATATTAATCA
TCCCCCTCCTTAATTTTACATACAAATACCCCTGCGCTTCCATTATTGCT
CAGTTCACCACATTTTGTAAGCCCCGCCCCTTTCCCTGCACCTTATATTG
TTATTTCACTCGCACATCTTTTGACTCTTTCGACACCTCACTATTATTAC
CTATCCCCCTAACCTCCTACACTTCTATATATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_j01.g1 MSMg01no180_j01.g1 CHROMAT_FILE:
MSMg01no180_j01.g1 PHD_FILE: MSMg01no180_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:50 2005
         (163 letters)



>mm_chr7_35072601_35073163
          Length = 563

 Score =  313 bits (162), Expect = 3e-90
 Identities = 162/162 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgagtcagagaccagcccaggttaagtgtcagagcagcttgggctaaaagacagccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgagtcagagaccagcccaggttaagtgtcagagcagcttgggctaaaagacagccct 260

                                                                       
Query: 61  atctcaacaatcaaaaataaacagatacaaattctggtcctgagacatatgaagtggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctcaacaatcaaaaataaacagatacaaattctggtcctgagacatatgaagtggttt 320

                                                     
Query: 121 atgcctgtaatcccagcacttgggaagctggggcagaaagaa 162
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcctgtaatcccagcacttgggaagctggggcagaaagaa 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)