Query= MSMg01no181_a03.b1 MSMg01no181_a03.b1 CHROMAT_FILE:
MSMg01no181_a03.b1 PHD_FILE: MSMg01no181_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:23 2005
(512 letters)
>mm_chr7_37297013_37297923
Length = 911
Score = 928 bits (480), Expect = 0.0
Identities = 501/508 (98%), Gaps = 1/508 (0%)
Strand = Plus / Minus
Query: 5 gaattctcagtctgtccatacatagggattacagaggtgaccgcactgcttggttgctgg 64
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 711 gaattctcagtctgt-gatacatagggattacaaaggtgaccgcactgcttggttgctgg 653
Query: 65 aatgttctagaaggatgtgttagaagagacctttacataggacacgtagtcagattctgc 124
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aatgttctagaaggatgtggaagaagagacctttacataggacacgtagtcagattctgc 593
Query: 125 tgtatgccttggatctccctggaagagccatggttcttggttctgaaatctcagcttgta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tgtatgccttggatctccctggaagagccatggttcttggttctgaaatctcagcttgta 533
Query: 185 ggagatccactcgggttgccagcatgaatatagcacactgagtcttagttcagcttcaca 244
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 532 ggagatccactcgggttgccagcatgaatatagcacaccgagtcttagttcagcttcaca 473
Query: 245 cacccacccttcggacactccaatcaaagactgttatgcctactaactccttaagtgtca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cacccacccttcggacactccaatcaaagactgttatgcctactaactccttaagtgtca 413
Query: 305 acagcttaatgtgcaggcctcttgccactggagtcttcttttccgtaggtcactcggtca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 acagcttaatgtgcaggcctcttgccactggagtcttcttttccgtaggtcactcggtca 353
Query: 365 ctgagtccctcctctggtgtggtctcagccagctgagaacagctgtaggcaaaacagtcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ctgagtccctcctctggtgtggtctcagccagctgagaacagctgtaggcaaaacagtcc 293
Query: 425 tgggtggtgttacccatgagaactcaggcaaagagaccactcctttctcactgttccttt 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cgggtggtgttacccatgagaactcaggcaaagagaccactcctttctcactgttccttt 233
Query: 485 ctggagacagatgggcacaggatcatgc 512
||||||||||||||||||||||||||||
Sbjct: 232 ctggagacagatgggcacaggatcatgc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 911
Length adjustment: 10
Effective length of query: 502
Effective length of database: 901
Effective search space: 452302
Effective search space used: 452302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_a03.g1 MSMg01no181_a03.g1 CHROMAT_FILE:
MSMg01no181_a03.g1 PHD_FILE: MSMg01no181_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:23 2005
(574 letters)
>mm_chr7_37141775_37142752
Length = 978
Score = 961 bits (497), Expect = 0.0
Identities = 552/579 (95%), Gaps = 17/579 (2%)
Strand = Plus / Plus
Query: 1 actttgctagatctgtttctgttcttgtgaggggaaaaaggaatttcattgagtttaaag 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgttagatctgtttctgttcttgtgaggggaaaaaggaatttcattgagtttaaag 260
Query: 61 gtgagcatactgtcggtctttctgtctgtctcactgtcagacaaatacaagtttggccaa 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgagcatactgtccgtctttctgtctgtctcactgtcagacaaatacaagtttggccaa 320
Query: 121 gaagtaattacagtaggagcagctgcaaatacccagggagaaagcagaggccaacaccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagtaattacagtaggagcagctgcaaatacccagggagaaagcagaggccaacaccct 380
Query: 181 gacacagaacaagcagggctcagcctaggcttgaggaagaactctccatttgagagagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacacagaacaagcagggctcagcctaggcttgaggaagaactctccatttgagagagag 440
Query: 241 ag----gaatcattacaactaaagaggacccaaaggaaaaaaatgggaatatattttcct 296
|| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagaggaatcattacaactaaagaggacccaaaggaaaaaaatgggaata--------- 491
Query: 297 ggaattt-ttccaggtcctggggattgaagtcagggcctcttgcttgctaggcaaacaaa 355
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 --aatatattccaggtcctggggattgaagtcagggcctcttgcttgctaggcaaacaaa 549
Query: 356 cactcagtgttgaggcaaacccaaaacagcccaccgatgggttctagacattctactact 415
|||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 550 cactcagttttgaggcaaactcaaaacagcccactgatgggttctagacattctactact 609
Query: 416 cagcctcagacccagcccctcactggggggttctaggcagatattttaccatggccccgt 475
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 cagcctcagacccatcccctcactggggggttctaggcagatattttaccatggccccgt 669
Query: 476 ggccccagccccttcttggtgatttctaagcaaaatcgctattgctaagccatatcctca 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ggccccagccccttcttggtgatttctaagcaaaatcgctattgctaagccatatcctca 729
Query: 536 aacccttcctaatgggttgtagtcaaactatcactgagc 574
| |||||||| |||| |||||||||||||| ||||||||
Sbjct: 730 accccttcctgatgg-ttgtagtcaaactaccactgagc 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 978
Length adjustment: 10
Effective length of query: 564
Effective length of database: 968
Effective search space: 545952
Effective search space used: 545952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
