BAC Information

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BAC

Clone NameMSMg01-181D02
Chromosome7 (Build37)
Map Location 115,227,302 - 115,227,609
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481
Downstream geneLOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181D02.T7 (MSMg01no181_d02.b1)MSMg01-181D02.TJ (MSMg01no181_d02.g1)
ACCAG374448AG374449
length810729
length of high quality
(start - end)
174 (78 - 251)318 (48 - 365)
definitionCHROMAT_FILE: MSMg01no181_d02.b1 PHD_FILE: MSMg01no181_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:36 2005CHROMAT_FILE: MSMg01no181_d02.g1 PHD_FILE: MSMg01no181_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTTTTTTGGTTGGGAGACTA
TTAATGACTGTTTCTATTTTTTTAAGGGGATATGGGACTATTTAGGTCAT
TAATCTGATCCTGATTTAAATTTGGTACCTTGTATCTGTCAAGAAATTTG
TCCATTTCATCCAGGTTTTCCAGTTCTGTTGTGTATAGCCTTTTGTAGTA
GAATGTAGTGGTGTTTTGCATTTTCTCCTTTTTTTTTACACCCCTTTTCA
TTATTTGTTCCTCTTTTTTTTTCTATATTTTTTTTTCTCCCCTCCCCCCC
CTTTTCCATTTCCCTCTCTTTTCCCTATTTTCCCCCCCCTTTTTTTTTTT
TCCTCCCCCTCTCTCCTCTTCTTTTTTTTTTTCCCCCCCCCCCCCCTTTT
TTCTCCCCCCTTTTTTTTTTTTTCCCCCCCCCTTTTTTTTTTCCCTCATA
TATTAATACCACTTTCTTCCTCTCTCTTATTCATAATATATTTTACCTTT
TCTCTTTTTATCCCCTTTTTTCCCCCCCTTTTTATTTTTCCCACCCCCCC
CCTTTTTTTTTTTTTTTCCCCCTTTTTTTCCCCCCCCCCTCCCCCCTCCC
CCCTTCCCTCTTTTTTTTTATCACACCCCCCCCCCCCCCCCTTTTTTTTT
TTTTTCAAATATTTCTTCACCGCCCTTTTTTTTTCTCCTTTTTTTTTTCC
CCTCTCCTCCCCCCCTCCCCTTATTCCTTTATTTATATTCTCCTTTCTCT
CCTTTTCTTG
CCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTAGCATTGACACACATGAGACATACCTCTGTATGAATCAGT
AAGGGAACATTTACACTTCCAAACCAACCCCATAAAAAAATAAAAAAACT
CAGGTAAATATGTCACATAGCAACCTTTTGAATGAAGGAAAAAGAAAGAG
GTAGACTGACCATTTAGAAGGGCATTCAGTAAGGTACATCCATGTCTATG
AGAATACAATGCCTATATTATAGTCTGTATGTAAAATGTCATGACCCATC
TCCTCCCATGTTCTCAGATTTATGTTTGAATACTTACCCTCTGGTTCGTG
GGATTGTATCTGGGGAAAAGACTATGGAACAAGCCTCGGGTCTGTGGCCT
ATTAAAAGGGGCATGACTTACACCCGATATTATGTCCTACTTGTGCCCCA
AACTCTCTGCTTCCTGCCTTACCACATTGTCCTACTTGTGCCCCAAACTC
TCTGCTTCCTGCCTTACCACATTGTGATAAGTCATGAGACACACCACGGG
CCATGCTGTTCCCACCATGATAGAACTGTGAACCTAAAGATGCTTTTCCT
CGCTTAAGTTGTTTCTGTCTGGTACCTTTGTTTTTACAAAGTTATATAAT
ATCTTACACACGAGATGATGTTGTTTTATTATCGGACATGAAAAGTTGTG
TATGGTAGCCACACGACTTTTAATTTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_d02.g1 MSMg01no181_d02.g1 CHROMAT_FILE:
MSMg01no181_d02.g1 PHD_FILE: MSMg01no181_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:37 2005
         (318 letters)



>mm_chr7_115227098_115227809
          Length = 712

 Score =  538 bits (278), Expect = e-157
 Identities = 303/316 (95%), Gaps = 10/316 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttagcattgacacacatgagacatacctctgtatgaatcagtaagggaacatt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gaattctttagcattgaaacacatgagacatacctctgtatgaatcagtaagggaacatt 453

                                                                       
Query: 65  tacacttccaaaccaaccccataaaaaaataaaaaaa--ctcaggtaaatatgtcacata 122
           || ||||||||||||       ||||||| |||||||  | |||||||||||||||||||
Sbjct: 452 taaacttccaaacca-------aaaaaaa-aaaaaaacccacaggtaaatatgtcacata 401

                                                                       
Query: 123 gcaaccttttgaatgaaggaaaaagaaagaggtagactgaccatttagaagggcattcag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gcaaccttttgaatgaaggaaaaagaaagaggtagactgaccatttagaagggcattcag 341

                                                                       
Query: 183 taaggtacatccatgtctatgagaatacaatgcctatattatagtctgtatgtaaaatgt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 taaggtacatccatgtctatgagaatacaatgcctatattatagtctgtatgtaaaatgt 281

                                                                       
Query: 243 catgacccatctcctcccatgttctcagatttatgtttgaatacttaccctctggttcgt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 catgacccatctcctcccatgttctcagatttatgtttgaatacttaccctctggttcgt 221

                           
Query: 303 gggattgtatctgggg 318
           ||||||||||||||||
Sbjct: 220 gggattgtatctgggg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 712
Length adjustment: 9
Effective length of query: 309
Effective length of database: 703
Effective search space:   217227
Effective search space used:   217227
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)