BAC Information

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BAC

Clone NameMSMg01-182K16
Chromosome7 (Build37)
Map Location 74,338,942 - 74,339,227
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrk1, Aldh1a3, Asb7, Lins2, Lass3, Adamts17
Downstream geneLysmd4, Mef2a, EG665304, Lrrc28, Ttc23, Dmn, LOC665319, LOC100041771, Igf1r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182K16.T7 (MSMg01no182_k16.b1)MSMg01-182K16.TJ (MSMg01no182_k16.g1)
ACCAG375482AG375483
length740754
length of high quality
(start - end)
322 (45 - 366)289 (70 - 358)
definitionCHROMAT_FILE: MSMg01no182_k16.b1 PHD_FILE: MSMg01no182_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:28 2005CHROMAT_FILE: MSMg01no182_k16.g1 PHD_FILE: MSMg01no182_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAAGAGGATCC
GCGGAATTCTCTGTTCGAATTTTTGGGGTCACTTAAGTATATGATCATAT
CATCTACAACAGTGAGTACACACACACACACACACACACACACACACACA
CACACACATATTATAGCTGTTGAGATGGTTTATCTGATCCTGTGCCCTCT
GGTTAGTCTGGCTAAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAACC
AGCTCCTGGTTTTGTTGATTGTTTGCATAGTTCTTTTTGTTTCTATTTGG
TTGATTCCAGCCCTGATTTTGATTATTTCTTGCTATCTACTCATTTTGGG
TGTATTTGCTTTCTTTGCTTTAGAGCTTTCAGGAGTGCTATCAAGCTGCA
AGTGTATTCTCCCCCCCCATTCTTTATGAAAGTTATTAGAGTGATGATCT
CTTCTCTTACCAATGCTTATCATTGATATCCATACTACTTAAATAAACTT
TCCCTCTCCTAATGTCTATTGTTTTACAATTATCGATAACTTTCACTTAC
TTTTTCCTCCTTATATTTTCTTTCTTCCTTTCCTCATTAATTGATCCTTA
CCCCACTTTACAATATTTACTCAACACCTCTATCTCCTCATAATCTACAC
ATCAATTCCTCCGTCATTTACTTTCTATATTTCCCACTCAACCCCACTAC
CCACTTTTTTTCTTTTTAACCCCTCGCCCCTTATTCTCCC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTCATTGAAGACAGTCAAATCCACCAGTGT
TATAGTTCTCAGTAACTGCCCATATCTTTAACACAAAGGTTAAAAATTAA
AACCATCAAAAAAATAATTCTAGGGCTGGAGAGATGGCTCAGCAGTTAAG
AGCACTGGCTGTTCTTCCAGAGGACCTGAGTTCAATTCCCAGCATCCACA
TGGTGGCTCACAACCATATGTAATGAGATCTGATGCCCTTTTCTGGTACA
CAGGTATGCATGCAGATAGAGCTCTTAAAATTAGTTAAATAAGTAAATCT
TTAAAATTTTTTTCTAGCCCCCCCCACCTATTAAGGAATATATAATATAA
AGGAATGAGGACACAGCTTTACAGAAAAACATGCCCCGGATATTTGAGGT
CATGGTTTCACGCCCCACAACTGCCAAAAACTTGTCGAATATACTCCTGC
TTTTGCCTTGTTTTTCCACAAAGGTTTTCACCGGTACTATCCGGTTATCC
CGCCAATTCGGGTCGAACACCCTGGCCATTCCCACACCCCCCTTCCCCGG
TCGTCTTTTGCCACCACCACATTCCCACTTATCACACCGTAATATTGAAC
ATCTTTACACCCTACTTAAAAATTTCTCGCCCCTCGTCCCTCATTTGTTC
CATTTGAACACAATACCCTGAGGGCGTCCAATAACCCAACCCAACAAGGG
TCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_k16.g1 MSMg01no182_k16.g1 CHROMAT_FILE:
MSMg01no182_k16.g1 PHD_FILE: MSMg01no182_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:28 2005
         (289 letters)



>mm_chr7_74338742_74339429
          Length = 688

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%), Gaps = 1/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcattgaagacagtcaaatccaccagtgttatagttctcagtaactgcccatatcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 attcattgaagacagtcaaatccaccagtgttatagttctcagtaactgtccatatcttt 260

                                                                       
Query: 61  aacacaaaggttaaaaattaaaaccatcaaaaaaataattctagggctggagagatggct 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 aacacaaaggttaaaaattaaaaccatcaaaaaa-taattctagggctggagagatggct 319

                                                                       
Query: 121 cagcagttaagagcactggctgttcttccagaggacctgagttcaattcccagcatccac 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagcagttaagagcactggctgctcttccagaggacctgagttcaattcccagcatccac 379

                                                                       
Query: 181 atggtggctcacaaccatatgtaatgagatctgatgcccttttctggtacacaggtatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atggtggctcacaaccatatgtaatgagatctgatgcccttttctggtacacaggtatgc 439

                                                          
Query: 241 atgcagatagagctcttaaaattagttaaataagtaaatctttaaaa 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atgcagatagagctcttaaaattagttaaataagtaaatctttaaaa 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space:   190120
Effective search space used:   190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)