BAC Information

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BAC

Clone NameMSMg01-184C08
Chromosome7 (Build37)
Map Location 129,271,613 - 129,271,913
singlet/doubletsinglet
Overlap genePalb2
Upstream geneOtoa, LOC668556, Hs3st2, Usp31, Scnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1
Downstream geneDctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486, Cacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184C08.T7 (MSMg01no184_c08.b1)MSMg01-184C08.TJ (MSMg01no184_c08.g1)
ACCAG376518AG376519
length731686
length of high quality
(start - end)
311 (61 - 371)272 (68 - 339)
definitionCHROMAT_FILE: MSMg01no184_c08.b1 PHD_FILE: MSMg01no184_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:23 2005CHROMAT_FILE: MSMg01no184_c08.g1 PHD_FILE: MSMg01no184_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGTTTTGTTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAAGTCTTACTACTGATTGTTTCCTGCCCTTTTCGA
TGCTTACCAAGGAGCGCAAGAGAATTAGTGTCAAAATAATCTTCCTTCTC
CTGTGAAACAGATGACTTCTCCCACGGCGTCTTTGTTGTCCCCGGAAGCG
TGTTCTGCTCTCTCTTGCCATCAGGGCTGCTGGTGCTATGCAAAAATTGT
CCTTGAATGTCACCTGCTCTTGGTGTATGTAATACTTCTTGGCCTTGTTT
ACAGTTAAAGGATTGAGGTTCAACATCAAGTATCTGAGAGATGTTTTCTC
CAGTCTCCTCATCCAGATGTTTGCTTTGTCCCCCCCCACCCCCGAAAGCC
TTTATTTATAGATTCTGAGGGGGAAAGCCCCACATATGAACTCATAAGTC
CACTCCCAGGTAGTCAGGATAACCAAAACCAGACCCACACAGAAACATAC
ACATAGCCATTCATGCAGCATATTTACAGTCCAAGAGTGGCCCTGAGGCT
GATGTATAAGGCCTGCCTTGAGTACCATGCCTGTCTGTGAAACATTGTAA
GAGCTATTTATGGCTCTGTGGTAAAACATCACATTAACAAAAAGCCATTT
AACTAAAATACATTTAAAAACCTACTTTTCCATCTATATCTCTAATATAG
CCTCTGAAAATCTGAGGACAATCTAGCTATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACATACTTAACACAAAATGGCAGAAATATTTTT
AGGTACACTTCAAAAATTATTGGACACATATATCCAGGCCTAATTACAGG
CCTTTGTGTAATGATTTTTTTCCTTTTATTTTTGAGGTTATAATTACAAA
CTTCTCCTTTTCCTTTCTTCTCATGTGCCCCTCCTGGCTCACTTTCAAAT
TCATGGATTATTTTTCATTAATTGCTGCATGAATGTGTGTGTGTGTGTGT
GTGTGTATTTACCTGGCCTGCTCAGTCTGTATAATGTTTTTTGTTTGTCC
CCCCCCCACATCTCCCTGTTTGACATTGGATAATAAGTCGGCGCCCCCCT
CCCATGAAAAATACGGTGTCTCTGGTGTCAGCATTGCTTCCTTGCCTGCG
GTCCCTGTTGTGGTATGAGGCCCGAGGTCATGACCCATCCACACTGGCAT
GCCTGTTGTTGCTGTTCATCTCATCCTTAAGCAGCCATGTTGGTGAGATT
CTTATGTAAGTCACTTCAGCCACTGCTAGTAAACATTTCTCACTACCACG
GTTCATTTGTTTATTCCCTATCCTTCCGCCTCCTCTCCAGTAAAGATCTC
TTTCGTGATTCGCAAATCTCATCTCGTGTCCCCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_c08.b1 MSMg01no184_c08.b1 CHROMAT_FILE:
MSMg01no184_c08.b1 PHD_FILE: MSMg01no184_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:23 2005
         (311 letters)



>mm_chr7_129271405_129272115
          Length = 711

 Score =  528 bits (273), Expect = e-154
 Identities = 294/301 (97%)
 Strand = Plus / Plus

                                                                       
Query: 9   tcttactactgattgtttcctgcccttttcgatgcttaccaaggagcgcaagagaattag 68
           |||| |||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 209 tcttcctactgattgattcttgcccttttcgatgcttaccaaggagcgccagagaattag 268

                                                                       
Query: 69  tgtcaaaataatcttccttctcctgtgaaacagatgacttctcccacggcgtctttgttg 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgtcaaaataatcttccttctcctgtgaaacagatgacttctcccacggcgtctttgttg 328

                                                                       
Query: 129 tccccggaagcgtgttctgctctctcttgccatcagggctgctggtgctatgcaaaaatt 188
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 329 tccccggaagcgtgttctgctctttcttgccatcagggctgctggtgctatgcaaaagtt 388

                                                                       
Query: 189 gtccttgaatgtcacctgctcttggtgtatgtaatacttcttggccttgtttacagttaa 248
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 389 gtccttgaatgtcacctgctcttggtgtatgtaatacttctttgccttgtttacagttaa 448

                                                                       
Query: 249 aggattgaggttcaacatcaagtatctgagagatgttttctccagtctcctcatccagat 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aggattgaggttcaacatcaagtatctgagagatgttttctccagtctcctcatccagat 508

            
Query: 309 g 309
           |
Sbjct: 509 g 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)