BAC Information

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BAC

Clone NameMSMg01-188G10
Chromosome7 (Build37)
Map Location 100,881,323 - 100,881,561
singlet/doubletsinglet
Overlap genenone
Upstream gene4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik, LOC100040298, LOC666783
Downstream geneEG638305, EG545982, EG666816
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188G10.T7 (MSMg01no188_g10.b1)MSMg01-188G10.TJ (MSMg01no188_g10.g1)
ACCAG379431AG379432
length850713
length of high quality
(start - end)
119 (60 - 178)243 (77 - 319)
definitionCHROMAT_FILE: MSMg01no188_g10.b1 PHD_FILE: MSMg01no188_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:03 2005CHROMAT_FILE: MSMg01no188_g10.g1 PHD_FILE: MSMg01no188_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCCTCCCTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCCTGATCCCTCCAATATTCTTAACATGAAGGA
GTATTGTATTTTGTCAAATGCTTTTCCTGCATCTTAGGAGATGATTATGT
GATTTTTTTGAGTTTGTTTATATAGTGGCTTTAGTGAATAATCCTACCCA
CCCCCCCCTCTCAACCTTCTTCAACCCTTTTCCTTCTTTTTCTCTTCTCA
TCCCACCCCACTCCATTTATATCCCCCACACCCACCTTACCTCCCCCCCC
CCCCCTCCTCCACCACCTCATTATTAAACCACCAAATTTATTCTAACATA
AATATAGAACATACAAACATACAAATTTTTTTTTTTTCCCCCCCCCCCCC
CCCATTATAAATTTAAAAAATATTAATCCCTTCTTTCCCCCCCCTCCCTT
AAAAAAAAAAAATACTCACTCCCCCTCAGTTTCACCCTTTCCTTCTCCAT
TTTCTTTCTCAACCTACCTCCTCTATCTCCCTCTCTTACACTCTTCTCTT
TCTCTTTATCCTCTTCTATCCCATTCCACCCACTATTATACCCTCCCTCC
ACATTTTCCCTCTACATCTTCACCTACCTCCTCCTCCCCCTTATTTTCTT
TCTTCTTTCCTCTCATTTTTCTCACCCTCACTTTCACAATTTCTCATTTC
ATTCATCTTTATAGCATATCTTTTCTTCATTTACTCCATTAATATTCTTA
TATTACCATTTTCTTTTTTTATTCTCACATTATTCAATTTTCTTTATATT
AATACCAAACTCCATATAACCCTTCCATCACTCAACCTTCTTAACACTTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTATTGATTTCCTGAAAATAAAT
AGAAAAGGGAAAGAGCTAAGTACCCTTCGTAACAGAATAACTGTGCAATG
GAGGAGGCAGGCTGTCACTGGCGTTTCCACAATAGAAAGTAGATAATGAG
AAGAACTCCATGTCTATTAAAGTAGATGAATAAAATCTACTAACTTTGAA
AGAGAAAAGTTAGACAGAGGTCATCCTCAGGAAATGTGGCTATATATTTA
AGAAAGATGGGAAATTTCCTTAATCTCAAGAAATCAGAATTTTTCCTTTC
CAGTTCTTTCATTACCTTCCCNNAACANNCCCCTAGCATAATGGTATCAA
TTTCCCTCATTAATAAATCCCGAAAAATAAAAAAAAATATTATTAAACAC
ACAAAATTAAGACAAAATACTGCAGAATTAAGTAAAACAACATGCAAATC
TGTTAAGATATTATGGTGCAATAAAATTTTGTTTATATAGAGGTAATCAT
CAGAATAATATACTAGCTTCACTTGAATTAATTCTGACTATTATTTTTAT
GATATTATTAACTTGTATATTTGTGACATTAGCACTTCATATGTAATCCA
TATGAGAAATGTTTCTTGAGTCTGTTAGCTTACCTAGACTTTACATTTTT
ATTTAACCACATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_g10.g1 MSMg01no188_g10.g1 CHROMAT_FILE:
MSMg01no188_g10.g1 PHD_FILE: MSMg01no188_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:03 2005
         (243 letters)



>mm_chr7_100881123_100881764
          Length = 642

 Score =  395 bits (204), Expect = e-114
 Identities = 231/240 (96%), Gaps = 1/240 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctattgatttcctgaaaataaatagaaaagggaaagagctaagtacccttcgtaacaga 60
           |||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 201 tctattgaattcctgaaaataaatagaaaagggaaagagctaagtaagcttcgtaacaga 260

                                                                       
Query: 61  ataactgtgcaatggaggaggcaggctgtcactggcgtttccacaatagaaagtagataa 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataactgtgcaatagaggaggcaggctgtcactggcgtttccacaatagaaagtagataa 320

                                                                       
Query: 121 tgagaagaactccatgtctattaaagtagatgaataaaatctactaactttgaaagagaa 180
           |||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tgaggagaactccatctctattaaagtagatgaataaaatctactgactttgaaagagaa 380

                                                                       
Query: 181 aagttagacagaggtcatcctcaggaaatgtggctatatatttaagaaagatgggaaatt 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 aagttagacagaggttatcctcaggaaatgtggctatatatttaagaaa-atgggaaatt 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 642
Length adjustment: 9
Effective length of query: 234
Effective length of database: 633
Effective search space:   148122
Effective search space used:   148122
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)