BAC Information

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BAC

Clone NameMSMg01-188I01
Chromosome7 (Build37)
Map Location 130,788,928 - 130,789,038
singlet/doubletsinglet
Overlap genenone
Upstream geneCacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Downstream geneEG628779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-188I01.T7 (MSMg01no188_i01.b1)MSMg01-188I01.TJ (MSMg01no188_i01.g1)
ACCAG379503AG379504
length663822
length of high quality
(start - end)
---111 (122 - 232)
definitionCHROMAT_FILE: MSMg01no188_i01.b1 PHD_FILE: MSMg01no188_i01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:10 2005CHROMAT_FILE: MSMg01no188_i01.g1 PHD_FILE: MSMg01no188_i01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAGGAGGAGGAAGAAAAGTGGGGGGGAAAGAGGGGTAATCAAAAAAGNGG
GNNNGGGGGNTTGAAAAAAAGGGNNGAAGGGNNNNGNNNNGNNNGGGNNG
GNNNTTANTCGAAAAAAAAGGGGNNGNNNNGNNGGNNGANNNGNNGNNGA
GGNGGGGAAGAGAAAGAGGGGGAGAGAAGAAAGGGGAAGGAGAGAGAAAG
GGAGGGNAAAAGAAGAGGGATGGGAGGAAGGAGGGAAGAAGGTGGGGGGG
GGAGAAAAGGGAGAGGGAGAAAAGATTTATTTAAGGAAAGAGAAAGAAGA
AAGAGAAAATTTTTTAACCCCCCCCCAAAAGAAAGAAGAAAGAAAGNGGG
GGGGNGGGGNNNAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGGGGGGGA
NGGGGGGAGGAAAGNGAGAGGGGAAGAGGAGAGGAAGAAAGGGGAGGGAA
AAAAAAGAGGGAGGAGGAAAAGGAAAAGAGAAGAGAGAGAGAGGGAGGAG
GAGGGAAAGAGGAAGAAGAGGGAGAAAAGAAAGGGAGGAGAGAAGAAAAA
GAGAAAAGGAGAAGAGAAGAAAGAGAAAGGGGAGGGAGAGAAGGGAAGAA
GAGGAAGGGAGGGAGGGGGGAGGGAAAAGAAGGAGGAGAGGGGGAGAGGG
AGGAAAAAGGGAG
NCCCCCCCCCTNNTTCTCNNTTCTTTCTTTCTTTATCCACCCCNCCTCCA
TGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTTGGACTGGATGGGAGGTTTCTTCAGG
GGTCTACTTGGCAGTTTGTGTTTCCCAGCATTGACAATTCAGGCAGAAGC
AGGGCAAACTTGCTGACTCCTTGGGATTTCAGAGCCTGGTCCCTTGAGCC
CAGATTTTATGACCCTGCTCTCATTGGCATGGATTCTTTTGTACATTTGG
CGCTTTGAGCGGCCTTCAAGGTTAGGCACCACCTCCAGTTACTCAGTACC
CAGAATGCGCCCCTGAGTGACCTGAGGCCCGCATGGTGATGAGCAATTCG
ATGCTTGCCCTATTTGCCCCCCCCCCCCCGANAGATGTATTCCACCTGTT
TTCCTTGACAGGGCTAATGAAAAAAAAATAAACAGCCTCCCGTGACCCTC
CTACTGTGTATTACAGCGTCTCTTTCCCACTTGACTTGCCTTTGAACACT
CAGCAGAGGACTCTAACTCCCTTGCCCTCGTTGTTCACACAAAACTGCTT
GAAGAATTCTCCCGGGGTGTCGTCTTATCTGCAGCTAAGGGATTATGGTC
TCGAAACCAGACATCTTTTCCTCTTTTTTCTCACATCGTTCATTTACCGG
TTTTTTCCCTTCCTTCCTTGTTTCGCTGCACCCCGACCCTAACTTCCCCG
TCCCGACTTTTGAATTACCTTTTATAACCCCGGGCTTTACCTGAAGAAAT
ACGGTCCTCCCTGGCCCCGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no188_i01.g1 MSMg01no188_i01.g1 CHROMAT_FILE:
MSMg01no188_i01.g1 PHD_FILE: MSMg01no188_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:10 2005
         (111 letters)



>mm_chr7_130788728_130789238
          Length = 511

 Score =  207 bits (107), Expect = 2e-58
 Identities = 110/111 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttggactggatgggaggtttcttcaggggtctacttggcagtttgtgtttcccagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttggactggatgggaggtttcttcaggggtctacttggcagtttgtgtttcccagcat 260

                                                              
Query: 61  tgacaattcaggcagaagcagggcaaacttgctgactccttgggatttcag 111
           ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tgacaattcaggcagaagcagggcagacttgctgactccttgggatttcag 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 111
Length of database: 511
Length adjustment: 8
Effective length of query: 103
Effective length of database: 503
Effective search space:    51809
Effective search space used:    51809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)