BAC Information

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BAC

Clone NameMSMg01-191A07
Chromosome7 (Build37)
Map Location 62,009,828 - 62,152,751
singlet/doubletdoublet
Overlap geneLuzp2
Upstream geneLOC668789, Mrps33p, LOC622146
Downstream geneLOC668796, Siglech, Tubgcp5, Cyfip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191A07.T7 (MSMg01no191_a07.b1)MSMg01-191A07.TJ (MSMg01no191_a07.g1)
ACCAG381177AG381178
length846717
length of high quality
(start - end)
320 (94 - 413)285 (78 - 362)
definitionCHROMAT_FILE: MSMg01no191_a07.b1 PHD_FILE: MSMg01no191_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:28 2005CHROMAT_FILE: MSMg01no191_a07.g1 PHD_FILE: MSMg01no191_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:28 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(62,152,436 - 62,152,751)(62,009,828 - 62,010,109)
sequence
TACCCTTTTTATTTCTTTTCTCACTTTTCGCGGGNAAANAAANTTATCTX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTACCATATGGAAATCATGGTCTCTCCCCAGTACGAGACCTTCATG
AGTCATGGCTTCCCACTCCTCTGCCTTTCTGAGTGGAAGCAGAGCCATTA
ATCTTGAAGCAGTCCTGTTTCATAAGAATGTTTAGTGTTCCCCTTTGAAA
CAGGCCCATTCTCAAAAGTCTTTAAAGCAAATTTGTGTTTGTATAACCCT
GAATCTATGATGGTCACATTAGAATACATATTTCAGTGACAGTCTGAAAT
AGAAGCATCTTTCCTATTGATGTGATGGGACTTCTCATTTTGTTTGCCCG
TGACCTCACAAATGCTCCATTTCTGACCACCCTGCCAATTTTCTAAATAA
ATTCATTCTCTTTTTACCTTTATATTGATTCTAAAAATAAAGTTAGCGTA
GAGAAGACAACCAGCACCACTGTTCTAGTTTGAATGTGACATGTGTCTAA
AGGTTCACGGGTTAATAAAGCTGATCCCCCTCATGATATATATCTTGATG
TACGCTAGTATCCTCTCTGGCCAAGACACGCTACTTGGAATGGGCCTTGT
ACTTTATCAAGTTTTATACTCTTTTCCTTTTCTTCCTCCGGATTTTTGGA
TTCTGTATGAAAAGCGGGGTTAAACATCGTTTCCTAAGTGGGTATCCCTT
TCTATCCCAAATATTGGAATCGGTCCGTGCTTATATGCAACTTTTTCTCC
GCCCCTAATAAATGGTTCTTTCTCTCTCTAACCCCCGGCGGGCCCN
CGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTTGACTGTGATATGCACT
TTATATGGGATGTCAACGAAATGCTGAATGTTAGACCATCTCTATTTCTT
TAATTTAAAATTCAGTCAAATTTCACCAGATCAAAGGCTCTCCGTAGAAT
TCATCTAGAAGTAAATAGCCTGAAGCTGACTTGGTGGATTGGTGTATCTT
TAACATCAAAATGAAGAAGATGATAAGATATGATTAGATGTTTTTGCTTC
TGTTTTACTTCTATGCTTCAGAGTGAATGGAAAATGCTGAGAGCAGTGCC
TTAAAGTTCTTTTTTTGGACCCCGCCCACCGTGGTAATAAGAAGCAGAGG
AAAATAACACTGTAGAAAGTATATCTGGCCCTTTCAATCCAAGGTACAGG
ATCATAAAGAGTCAAATTGGAAGTCATGATAGCTATCACAATATCTCATC
AAGATAGCTAAACTTATGTACATAAGTTTTGAGATACATACCCAAAAATA
TTAGTACATATATTTTGCCTCCCACCATCTTGTAATAAATTATGGGGAAA
TCTTGGAACCTTAACACTAAAGGAATTATCCCCTAATGGGAATCGTCAGT
TTTTAAATATTGGGCCTAAATTAACCCTCCTTGGAGCTTTTTGAAAAGTT
CCTCTCAATAAAAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_a07.b1 MSMg01no191_a07.b1 CHROMAT_FILE:
MSMg01no191_a07.b1 PHD_FILE: MSMg01no191_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:28 2005
         (320 letters)



>mm_chr7_62152232_62152951
          Length = 720

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtaccatatggaaatcatggtctctccccagtacgagaccttcatgagtcatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattcagtaccatatggaaatcatggtctctccccagtacgagaccttcatgagtcatg 461

                                                                       
Query: 65  gcttcccactcctctgcctttctgagtggaagcagagccattaatcttgaagcagtcctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gcttcccactcctctgcctttctgagtggaagcagagccattaatcttgaagcagtcctg 401

                                                                       
Query: 125 tttcataagaatgtttagtgttcccctttgaaacaggcccattctcaaaagtctttaaag 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tttcgtaagaatgtttagtgttcccctttgaaacaggcccattctcaaaagtctttaaag 341

                                                                       
Query: 185 caaatttgtgtttgtataaccctgaatctatgatggtcacattagaatacatatttcagt 244
           |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 340 caaatttgtgtttgtataacactgaatctatgatggccacattagaatacatatttcagt 281

                                                                       
Query: 245 gacagtctgaaatagaagcatctttcctattgatgtgatgggacttctcattttgtttgc 304
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gacagtctgaaatggaagcatctttcctattgatgtgatgggacttctcattttgtttgc 221

                           
Query: 305 ccgtgacctcacaaat 320
           ||||| ||||||||||
Sbjct: 220 ccgtgtcctcacaaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no191_a07.g1 MSMg01no191_a07.g1 CHROMAT_FILE:
MSMg01no191_a07.g1 PHD_FILE: MSMg01no191_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:28 2005
         (285 letters)



>mm_chr7_62009628_62010312
          Length = 685

 Score =  499 bits (258), Expect = e-146
 Identities = 276/282 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatttgactgtgatatgcactttatatgggatgtcaacgaaatgctgaatgttagacc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tttatttgactgtgatatgcactttatatgggatgtcaacggaatgctgaatgttagacc 260

                                                                       
Query: 61  atctctatttctttaatttaaaattcagtcaaatttcaccagatcaaaggctctccgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctctatttctttaatttaaaattcagtcaaatttcaccagatcaaaggctctccgtag 320

                                                                       
Query: 121 aattcatctagaagtaaatagcctgaagctgacttggtggattggtgtatctttaacatc 180
           ||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 321 aattcatctagaagtgaatagcctgaagctgacttgggggattggtggatctttaacatc 380

                                                                       
Query: 181 aaaatgaagaagatgataagatatgattagatgtttttgcttctgttttacttctatgct 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 aaaatgaagaagatgataagatatgattagatggttttgcttctgttttacttctatgct 440

                                                     
Query: 241 tcagagtgaatggaaaatgctgagagcagtgccttaaagttc 282
           ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagagtaaatggaaaatgctgagagcagtgccttaaagttc 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)