BAC Information

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BAC

Clone NameMSMg01-192B16
Chromosome7 (Build37)
Map Location 115,377,792 - 115,377,987
singlet/doubletsinglet
Overlap genenone
Upstream geneSyt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1
Downstream geneOlfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192B16.T7 (MSMg01no192_b16.b1)MSMg01-192B16.TJ (MSMg01no192_b16.g1)
ACCAG381893AG381894
length1,2481,260
length of high quality
(start - end)
407 (43 - 449)381 (73 - 453)
definitionCHROMAT_FILE: MSMg01no192_b16.b1 PHD_FILE: MSMg01no192_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:02 2005CHROMAT_FILE: MSMg01no192_b16.g1 PHD_FILE: MSMg01no192_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGACAGTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTTCCCAGAAAGTCTCTTGAAATGTTATCTAAGCATTCCATCAGAGA
CCATCTCTCATCACTTCCATTTCTCAGTCCAATACATTCTTTATGTTTTT
AATTAGTGAATGCATATCACAGAATGAGTCTAATTTTGAAAATCCCAATC
ATGTAATATATACATTGAGAAAATATCCACCCCGCTACCCAGTCTCACCC
CATTCTTAATATTTCATAAATGTCATGCCCCACATATCCTGCTGTTCCAA
TCTCCTATTTTTTGTGTGACTTCTCATGCCCCCATTACCCTAATGTTGTT
TTTGTTTAGTCATATTGTAAAATTTTGTTTGTGTACTATACTTTCTGAAA
GGGGTTATTCTATAGTCCTGATTAAGAAAAAGTGAAACTTCCTTGAACCA
TTTGTTTTCCGCCCCCTCTGCTATATTTAAGCTTAAGAAAAAAAATGCTG
GTCCAGCATGGCCTTGCTAGGGAAAGAATGACATGTTTCCTGCCCCTGGG
ACAGGGTCAGTGGGAGTGGGCCTCCATGAGTGGTAAGGACTGTCCCCAGC
GTTAGGCTCCTTTGTACAATGGTCTACATATTTTCACATCATTCCAAGGA
ATGTCCCCCTGTTAATGTTAATGACTCCATGATTGTCAGAAACAGCATGA
ATCCAGGAGGCAAAACTGTGGCCAATGTCTTAGCAAAATGGTAAGCCCTG
TGCCCTTCAGAACAGGACAACCCTTGCGGCTATGCAAAAGAACTCAGAAA
TCATAATTTTAAAATATATCATTTCCTTACTATGCCAAAAATATTATAAT
GCCATATGAATCGTATAAGGAGCTTCTAAGATCTGGAAGGAACCAAGCTT
TTTTCCTTGTGACCCCATTCTTTTTAATAATTCTATGTCGTTTTGATAAA
AATTCAGGCATATATTTTAATTTAAAGTTCCCCGGGAAACAAAAAGTTCC
ACCCCTATCTGTGTAAAAATTTAATTTTCTTGCTCCAACCTCTCCCCACT
TTTCTTTTATTAAATAAGTCTTTAATTGTCTCTTTTTTGCAAATTTCATA
TAATAACACCTCTCTTTTTTATTTAACAAAATTTAATAATTTTAGATACC
CAACCTTTCTTTCTTTCTCTTCCTCTCTACTTTGATTTATTCTTTTTTAT
CTCTCCATTATCATTATTTATCTTATTTCTATCTACACTTTTATCTCT
NNNAATTTGAGGTGAGNCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACAAAAACACTAAAATTTTAAGCTAAT
ATATATATATATACACACACACACATATATATATATGCAAAGGGTAAAAA
GAGAATATATGCATGTATATTTTATAAACATATCTTTATATTATATTCAT
ATTTATAAAATAAAAATATGTTTACATGTAATGTATAATATATTAATATA
TTATAATTATAATTATATATTTATACATGATATAATATAACTAATAATTA
TATAATTAATATTTAGAATATATAATATAAATATAATGTTTAAAATTTTC
TCTTTATAATTAATTTTTAAATTAAATATGTTTTGATCATATTATTATTC
TCCCCCAAGTCCTCCCTAACCTTTTGCCCTTTGTACACACTTTTAGGTAT
TTTTTTTTACCCCCCCAATACAATAACAGAACCCTCCAAAAAAAAGAAAA
AAATGAAAAAATTCATGCCCAAATACAACAACAAAAACAGAATGAATGAA
AGGATAAAAACACTGAACTATAATTAAATTAAACACAGAGAAAAACTATA
TAGTCCATTACACGTTGGTCAACTACTCCCCAACACGAGGCCTGTTAGGG
AGTTGTTAATGAAGGGCAATCCAGCAGACCCAAGCACTATAGGCATGATG
CACACCCATACTTGCTCTTCCCTCTCTCTTACTAAACCCTTAGATCACAT
TCCTAAAGCAGGCTTTCACTGTCTGATTCCTTATATATTTACTGACTTAT
TTCTGAGAATAACCACCAAGGTCCAATCAAAATTCCTGTCTAACCAGGAC
TTTCCATCTCAGCCTAGCATAAATTCTCCGTTTTCTCCTTAAAAACCAAC
TCTTGCAAAAATCATCCGTTGTTTGGTGTCGGGTTTCCCCCGAACCAAAA
AGAACACTCACTCCCCGCCTTTAAATTTTCCGGCCAAAAATTTGGGGGGG
TTCTTTACCCAATCTTATGAGGCCCCCCCCCCTCAATTGGTGGTGGTGAT
TGGGATATATATCTTGTATGGTCCACACAACCCTCAACCCATTTTTTTTT
GTAAAGACACCTCGTCCTCGTGCCTCTTTTCCACTAGCTTATTTGTGGAT
TTCCCTTTCTCTCTTTCCTTATATTCTTCAACCAAAAACATAGGGGTATA
CTTTCTCACCCTCTCCTTTATTTNCNCAAGTCACTCACAACTTCTCCTCA
CTCCATATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_b16.b1 MSMg01no192_b16.b1 CHROMAT_FILE:
MSMg01no192_b16.b1 PHD_FILE: MSMg01no192_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:02 2005
         (407 letters)



>mm_chr7_115377382_115378187
          Length = 806

 Score =  192 bits (99), Expect = 5e-53
 Identities = 173/203 (85%), Gaps = 13/203 (6%)
 Strand = Plus / Minus

                                                                       
Query: 211 ttcttaatatttcataaatgtcatgccccacatatcctgctgttccaatctccta-tttt 269
           |||||| || ||||||||||||||| |||| |||||||| | ||||||||||||| ||||
Sbjct: 606 ttcttattacttcataaatgtcatgtcccatatatcctgttcttccaatctcctattttt 547

                                                                       
Query: 270 ttgt---gtgacttctcatgcccccattaccctaatgttgtttttgtttagtcatattgt 326
           ||||   |||     ||||||  ||||| ||||||| |||||||||||||||||||||||
Sbjct: 546 ttgtcaggtg-----tcatgcttccattgccctaatattgtttttgtttagtcatattgt 492

                                                                       
Query: 327 aaaattttgtttgtgtactatactttctgaaaggggt--tattctatagtcctgattaag 384
           ||||||||||| |||||||||| |||||||||||  |  ||  ||| | |||||||| ||
Sbjct: 491 aaaattttgttcgtgtactatattttctgaaagg--tcctaccctacaatcctgattgag 434

                                  
Query: 385 aaaaagtgaaacttccttgaacc 407
           |||||||||||||||||||||||
Sbjct: 433 aaaaagtgaaacttccttgaacc 411


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 806
Length adjustment: 9
Effective length of query: 398
Effective length of database: 797
Effective search space:   317206
Effective search space used:   317206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)