BAC Information

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BAC

Clone NameMSMg01-193N10
Chromosome7 (Build37)
Map Location 102,239,066 - 102,239,356
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545982, EG666816, LOC100040132
Downstream geneLOC666823, Frda-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193N10.T7 (MSMg01no193_n10.b1)MSMg01-193N10.TJ (MSMg01no193_n10.g1)
ACCAG382981AG382982
length857761
length of high quality
(start - end)
---292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no193_n10.b1 PHD_FILE: MSMg01no193_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:30 2005CHROMAT_FILE: MSMg01no193_n10.g1 PHD_FILE: MSMg01no193_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACCTTATTCTCTCAGCTGAGCTGCCTCAGCAAAAATTTCTTTAAG
TTGACCAATTGTAAACAGAGACTCCCCCGAGAAGAAGGAGAGGTCAGGAG
GATGAGGAGGAGGAGGAGAGAGCCTCCTTCCCCTTCTCTCCCCCCCCCCT
TCTCTTCCCCTCCTCTTCCCTCTCTTTCCTTTCCTCCTCCCTTCTCCCTC
TCCCCCCCTCCCTCCTCCCTCCCTCTTTCTTTCTTCTTTCCCCCCTCCCC
CTCTCTCCCTTTCCCCTTTCCTCCTTTTTTTTTCCCTCCCCCTCCTCCCC
TCCCCCTTCCCTTTTCTCCCTTCCTCCTCCCCCCCCCCCTCCTCCTTCTT
CTCTCTCCCCTCTCCCCTCTCTTCTTTCCCCCCCCCCCCCCTCTCCCTCC
CCTCTCCCCCTTTTCCCCTCCCCCCCCTCCCCCTCTTCCTTCTCCTCCCC
TTTTCCTCCTCCTCCCTTTCCCTTCCCTCTCCCCCTCCTCTCTCTCCTCC
CTTTCCCTCCTCCCTTCTCCTTTCCTTCTTCCTTCCCCTCTTTTTTTCCT
CTTTCTTTCCCCCCCTTTTCCTTCCTCCTCTCCCTCCTCCCCCTCCTCCT
TCCTCTCTCCTCTTTCCTTTCCTCCCCTTCCCTTCCTTTCCTCCTCTCCT
CCCTCTTTCCCCCTCCTCCCCTCTTTTTTTCTCCCCCTCCCTCTTCTCTC
TCTTCTTTCCCTCCTTCCTCTCCCTCTCTCCCTTCTTCTTCCCCTCTTCT
TCCTCCCTCCTCCCTTCCTCTTTCTTCTTCTTCCCCCCTCCCTTCTCCCC
CCCCCCN
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTCAGAGACAGAGGAAGAAAGG
GATAGACCATTTTTACGGATTTTACTGCCATTGCTATGATCAAACGTCAA
ATACAGAGTTGAGACTAGCTTATATATTCACCCACCTTCAGGCCTAAGGG
CCCAGACTCACTCTCAAAGCAAAGACAATGGAGAGCTGTTCCTATAGAAA
CTCTAAAAGCTTATCTGGGTAAAAAGATTATTTCTTAGCCGATTAAACAC
CTGTTCAAAAATTAAGGCTAACTTTCACCCTTTAGTCATCTCCCATCATG
TGCCACCTCCTCCAATGTTTTTAGGACACATGTCTAATATTTTTACACAC
AAAATATCCACCCCCTCCTCCCGAGGCTTCTGATATAGTCCTGAGTTGAG
CTACCATCAAAGTCTTCATATCTCACCTGAGTGTTTAATTGCTCACCCAG
CAAACACTTTTTTTCCCAGATGCAATTTATATTACATTTAGATGTTATTT
CAACGCATAAATGTGATCTTCTCAGATACTTATTGAAAAGTAGGGCTTCA
TAGAATATTTTTGGACAGATGAGATTTTTAAAATAGGGTGGATAGATGAG
TGTGCTTAAATGTTTTGAACATTGTAAAATGTCTGGTATGAAAATATCAC
CTATTATCCTATTATTGTTTCACAATTTTAGATCAATTAAAATAAAACAC
TTTAAGTGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_n10.g1 MSMg01no193_n10.g1 CHROMAT_FILE:
MSMg01no193_n10.g1 PHD_FILE: MSMg01no193_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:30 2005
         (292 letters)



>mm_chr7_102238866_102239557
          Length = 692

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtcagagacagaggaagaaagggatagaccatttttacggattttactgccattgcta 60
           |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 cagtcagaaacagaggaagaaagggatagaccatttttacggattttactgctattgcta 260

                                                                       
Query: 61  tgatcaaacgtcaaatacagagttgagactagcttatatattcacccaccttcaggccta 120
           ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 261 tgatcaaacgtcaaatacagagttgagactagcttatattttcgcccaccttcaggccta 320

                                                                       
Query: 121 agggcccagactcactctcaaagcaaagacaatggagagctgttcctatagaaactctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggcccagactcactctcaaagcaaagacaatggagagctgttcctatagaaactctaa 380

                                                                       
Query: 181 aagcttatctgggtaaaaagattatttcttagccgattaaacacctgttcaaaaattaag 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 aagcttatctgggtaaaaagattatttcttagcccattaaacacctgttcaaaaattaag 440

                                                              
Query: 241 gctaactttcaccctttagtcatctcccatcatgtgccacctcctccaatg 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctaactttcaccctttagtcatctcccatcatgtgccacctcctccaatg 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)