BAC Information

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BAC

Clone NameMSMg01-194D08
Chromosome7 (Build37)
Map Location 121,110,185 - 121,110,472
singlet/doubletsinglet
Overlap geneSpon1
Upstream geneLOC434227, Arntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2, EG434228
Downstream geneRras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194D08.T7 (MSMg01no194_d08.b1)MSMg01-194D08.TJ (MSMg01no194_d08.g1)
ACCAG383216AG383217
length758736
length of high quality
(start - end)
301 (46 - 346)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no194_d08.b1 PHD_FILE: MSMg01no194_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:01 2005CHROMAT_FILE: MSMg01no194_d08.g1 PHD_FILE: MSMg01no194_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTACCCTGTCACAATTATTCTTAAAAAGTGAAGACATAAAGACG
TTCTCAGACAAATAAAAACTGAGAGGATTTGTTTCGAGTTAGAACTGAAT
TTCTAAAAATGGTTTTTAGAAGGTGTTCAGAGAGAAGACAAATGATCTAG
CTCAGAAGAACATCAGAAAAGGAATGTGAAGACAAAAAAAACCCCTCTTT
TTCTTAATTGATCTAACAGGTGACAACTCGTTCAGAACAAAATCAGCAGT
GTACTCGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNN
NNNNNNNNNTNTTTTTTTTCCCCCCCCCCCCCCCCCTTTTTTTTCTCCCT
CCTTTTCCCTCCTCCCCCCTCTCTTCATAAACATTTCTCCTCCTTTTCCC
CTTTTCCTTTTTTTTCTTTTCTTCTCCTTTTTCTCTTTACCCTTTCTCTT
TCTCCTTCTCTTCTTTTCCTTTTCCTCTTTTCCTATTATTTCTTATCCCC
CACCCCTTTATCTCCTCACTTCTTTTTTACTTCCCCATCACATACCATTC
CCCTATATTTATCTTTACTTTTTACTCTTTTCTCCCTTTTTTTTTTCCTC
TCTTCCATTTTTTTTTTTATTTTTCCCCCTTTTATATTTGNNTTTCNNCT
CTTTNNNNNCNTCNCTCTACTTCATTTCCTCTTATTACCCCTTATTTTTT
TCTATTAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACTTGGTTTATTGGCAGAAACC
TTACTCAAGAAGGAATAGAATGGTAAGACCTCCCAACTAGCCTTTAGAGA
TGATGGAGGAAATAAAGACCTCTTAGACTCATTGGAGCTCATGACTACCA
GGTTAGCTTCACAGGAAGGTTTATGAGAGTCCTGTATCCATACGCAAAGA
TAAAGTAGTTGCCACCTTTAAAGCATGTGGAAGTATAACCCCTACTAGGA
GAGTAGATACAGGAAGGAAAACAGAGACTGAAACGTTACTGACAGAGTGA
GGAAGCACAAAGACTTTTTGGAGAGCACCCCCCCGACCAAAGAAGATGCA
GAACAGAGGAAGACTCACCAAAATGGCAGGAATAAGTCTTTAACTATCAC
TGGTAACTTTGAGCTCAGGTCTCCAAACAAGCAAAATTCATCTAAATGGA
TAAAAGGTTGACCTAACAACATACTACCTATAATAAACCCACATTACAAC
TAAATGCACACATACACCCGAAGAGAAAGGCTGGAAAGCAGGGTACTCAG
CACAGGGAAATATAAAGAAAACACAAGTAGCTTTGATTAAATATGCCAAG
ACAGAAACAGAGACAAAAAAGTTCTGTAGGGTCAGTTCATCAAAAAGATA
AGATTATAAGCCATGATGCACCTAAAATTGAAGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_d08.g1 MSMg01no194_d08.g1 CHROMAT_FILE:
MSMg01no194_d08.g1 PHD_FILE: MSMg01no194_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:01 2005
         (291 letters)



>mm_chr7_121109985_121110675
          Length = 691

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacttggtttattggcagaaaccttactcaagaaggaatagaatggtaagacctcccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tcacttggtttattggcagaaaccttactcaagaaggaatagaatggtaagacctcccaa 429

                                                                       
Query: 61  ctagcctttagagatgatggaggaaataaagacctcttagactcattggagctcatgact 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atagcctttagagatgatggaggaaataaagacctcttagactcattggagctcatgact 369

                                                                       
Query: 121 accaggttagcttcacaggaaggtttatgagagtcctgtatccatacgcaaagataaagt 180
           |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 368 accaggttagcttcacaggaaggtttttgagagtcctgtatccagacgcaaagataaagt 309

                                                                       
Query: 181 agttgccacctttaaagcatgtggaagtataacccctactaggagagtagatacaggaag 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 agttgccaccttgaaagcatgtggaagtataacccctactaggagagtagatacaggaag 249

                                                           
Query: 241 gaaaacagagactgaaacgttactgacagagtgaggaagcacaaagac 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gaaaacagagactgaaacgttactgacagagtgaggaagcacaaagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)