BAC Information

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BAC

Clone NameMSMg01-194M14
Chromosome7 (Build37)
Map Location 115,226,984 - 115,227,609
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2, 5330417H12Rik, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481
Downstream geneLOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194M14.T7 (MSMg01no194_m14.b1)MSMg01-194M14.TJ (MSMg01no194_m14.g1)
ACCAG383573AG383574
length736739
length of high quality
(start - end)		685 (46 - 730)660 (76 - 735)
definitionCHROMAT_FILE: MSMg01no194_m14.b1 PHD_FILE: MSMg01no194_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:46 2005CHROMAT_FILE: MSMg01no194_m14.g1 PHD_FILE: MSMg01no194_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTAGCATTCAAACACATGAGACATACCTCTGTATGAATCAGTAA
GGGAACATTTACACTTCCAAACCAAAAAATAAAAAAATAAAAAAACTCAG
GTAAATATGTCACATAGCAACCTTTTGAATGAAGGAAAAAGAAAGAGGTA
GACTGACCATTTAGAAGGGCATTCAGTAAGGTACATCCATGTCTATGAGA
ATACAATGCCTATATTATAGTCTGTATGTAAAATGTCATGACCCATCTCC
TCCCATGTTCTCAGATTTATGTTTGAATACTTACCCTCTGGTTCGTGGGA
TTGTATCTGGGGAAAAGACTATGGAATAAGCCTCGGGTCTGTGGCCTATT
AAAAGGGGCATGACTTAAAGGTGATATTAGGTCCTACTTGTGCCCCAAAC
TCTCTGCTTCCTGCCTTACCACATTGTCCTACTTGTGCCCCAAACTCTCT
GCTTCCTGCCTTACCACATTGTGATAAGTCATGAGACACACCACGGGCCA
TGCTTTCCCACCATGATAGAACTGTGAACCAAAAGATGTCTTTCCTCCCT
TAAGTTGTTTCTGTCTGGTACAATGAAAAAAAAAATAAAAGATAACATTT
TACAAAGAGATGATGTGTATTAAGAAAGGAGATGAAAAGCTGGGCATGGT
GGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAAGGAGCAATTTGCAAATTCATC
TGGAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAGGATAAAAG
AACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAA
TTGTGGTAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTAGACCAA
TGGAATAGAATTGAAGACCCAGAAATGAACCCACATACCTATGGTCACTT
GATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTT
TCAACAATTGGTGCTGGCACAACTGGTTGTTATCATCTAGAAGAATGTGA
ATCGATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAATGGATCAA
AGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGG
GGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACA
GCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAA
ACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAGAGAC
CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGA
CTAATATCCAACATATATAAAGAACTCAAGAAGGTGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_m14.b1 MSMg01no194_m14.b1 CHROMAT_FILE:
MSMg01no194_m14.b1 PHD_FILE: MSMg01no194_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:46 2005
         (685 letters)



>mm_chr7_115226885_115227969
          Length = 1085

 Score = 1011 bits (523), Expect = 0.0
 Identities = 615/679 (90%), Gaps = 55/679 (8%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttagcattcaaacacatgagacatacctctgtatgaatcagtaagggaacatt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gaattctttagcattgaaacacatgagacatacctctgtatgaatcagtaagggaacatt 666

                                                                       
Query: 65  tacacttccaaaccaaaaaataaaaaaataaaaaaa--ctcaggtaaatatgtcacatag 122
           || ||||||||||||      ||||||| |||||||  | ||||||||||||||||||||
Sbjct: 665 taaacttccaaacca------aaaaaaa-aaaaaaacccacaggtaaatatgtcacatag 613

                                                                       
Query: 123 caaccttttgaatgaaggaaaaagaaagaggtagactgaccatttagaagggcattcagt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 caaccttttgaatgaaggaaaaagaaagaggtagactgaccatttagaagggcattcagt 553

                                                                       
Query: 183 aaggtacatccatgtctatgagaatacaatgcctatattatagtctgtatgtaaaatgtc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 aaggtacatccatgtctatgagaatacaatgcctatattatagtctgtatgtaaaatgtc 493

                                                                       
Query: 243 atgacccatctcctcccatgttctcagatttatgtttgaatacttaccctctggttcgtg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atgacccatctcctcccatgttctcagatttatgtttgaatacttaccctctggttcgtg 433

                                                                       
Query: 303 ggattgtatctggggaaaagactatggaataagcctcgggtctgtggcctattaaaaggg 362
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 432 ggattgtatctggggaaaagactatggaataagcctcaggtctgtggcctattaaaaggg 373

                                                                       
Query: 363 gcatgacttaaaggtgatattaggtcctacttgtgccccaaactctctgcttcctgcctt 422
           |||||||||||||||||||||||                                     
Sbjct: 372 gcatgacttaaaggtgatattag------------------------------------- 350

                                                                       
Query: 423 accacattgtcctacttgtgccccaaactctctgcttcctgccttaccacattgtgataa 482
                   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 --------gtcctacttgtgccccaaactctctgcttcctgccttaccacattgtgataa 298

                                                                       
Query: 483 gtcatgagacacaccacgggccatgctttcccaccatgatagaactgtgaaccaaaagat 542
           |||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 297 gtcatgagacaccccacgggccatgctttcccaccatgatagaactatgaaacaaaagat 238

                                                                       
Query: 543 gtctttcctcccttaagttgtttctgtctggtacaatgaaaaaaaaaataaaagataaca 602
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 237 gtctttcctcccttaagttgtttctgtctggtacaatg-aaaaaaaaataaaagataaca 179

                                                                       
Query: 603 ttttacaaagagatgatgtgtattaagaaaggagatgaaaagctgggcatggtggcacac 662
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 178 ttttacaaagagatgatgtgtattaagaaaggagatgaaaagctggacatggtggcacat 119

                              
Query: 663 gcctttaatcccagcactc 681
           |||||||||||||||||||
Sbjct: 118 gcctttaatcccagcactc 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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